8P1Z image
Deposition Date 2023-05-13
Release Date 2024-05-22
Last Version Date 2024-12-04
Entry Detail
PDB ID:
8P1Z
Title:
Arabidopsis thaliana cytosolic seryl-tRNA synthetase in addition of dithiothreitol (DTT)
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.28
R-Value Work:
0.22
Space Group:
I 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Serine--tRNA ligase, cytoplasmic
Gene (Uniprot):F21A20_180
Chain IDs:A (auth: AAA)
Chain Length:456
Number of Molecules:1
Biological Source:Arabidopsis thaliana
Primary Citation
Evolutionarily conserved cysteines in plant cytosolic seryl-tRNA synthetase are important for its resistance to oxidation.
Febs Lett. 597 2975 2992 (2023)
PMID: 37804069 DOI: 10.1002/1873-3468.14748

Abstact

We have previously identified a unique disulfide bond in the crystal structure of Arabidopsis cytosolic seryl-tRNA synthetase involving cysteines evolutionarily conserved in all green plants. Here, we discovered that both cysteines are important for protein stability, but with opposite effects, and that their microenvironment may promote disulfide bond formation in oxidizing conditions. The crystal structure of the C244S mutant exhibited higher rigidity and an extensive network of noncovalent interactions correlating with its higher thermal stability. The activity of the wild-type showed resistance to oxidation with H2 O2 , while the activities of cysteine-to-serine mutants were impaired, indicating that the disulfide link may enable the protein to function under oxidative stress conditions which can be beneficial for an efficient plant stress response.

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Primary Citation of related structures