8P0J image
Deposition Date 2023-05-10
Release Date 2024-05-22
Last Version Date 2025-07-02
Entry Detail
PDB ID:
8P0J
Keywords:
TRANSCRIPTION
Title:
Cryo EM map and model of the vaccinia RNA polymerase intermediate pre-initiation open promoter complex
Biological Source:
Source Organism:
Vaccinia virus (Taxon ID: 10245)
Host Organism:
Vaccinia virus
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
2.39 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
8P0J validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase 147 kDa polypeptide
Gene (Uniprot):OPG105
Chain IDs:A
Chain Length:1286
Number of Molecules:1
Biological Source:Vaccinia virus
UniProt ID:P20504 Pfam ID:PF04997, PF00623, PF04983, PF05000, PF04998
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase 133 kDa polypeptide
Gene (Uniprot):OPG151
Chain IDs:B
Chain Length:1164
Number of Molecules:1
Biological Source:Vaccinia virus
UniProt ID:P68694 Pfam ID:PF12415, PF04565, PF04567, PF00562, PF04560
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase 35 kDa subunit
Gene (Uniprot):OPG156
Chain IDs:C
Chain Length:305
Number of Molecules:1
Biological Source:Vaccinia virus
UniProt ID:P21087 Pfam ID:PF03396
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase 22 kDa subunit
Gene (Uniprot):OPG103
Chain IDs:D (auth: E)
Chain Length:185
Number of Molecules:1
Biological Source:Vaccinia virus
UniProt ID:P68608 Pfam ID:PF05273
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase 19 kDa subunit
Gene (Uniprot):OPG131
Chain IDs:E (auth: F)
Chain Length:164
Number of Molecules:1
Biological Source:Vaccinia virus
UniProt ID:P68610 Pfam ID:PF05320
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase 18 kDa subunit
Gene (Uniprot):OPG119
Chain IDs:F (auth: G)
Chain Length:161
Number of Molecules:1
Biological Source:Vaccinia virus
UniProt ID:P21034 Pfam ID:PF03293
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Intermediate transcription factor 3 large subunit
Gene (Uniprot):OPG150
Chain IDs:G (auth: H)
Chain Length:382
Number of Molecules:1
Biological Source:Vaccinia virus
UniProt ID:P20998 Pfam ID:PF05718
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Intermediate transcription factor 3 small subunit
Gene (Uniprot):OPG134
Chain IDs:N (auth: I)
Chain Length:288
Number of Molecules:1
Biological Source:Vaccinia virus
UniProt ID:P20986 Pfam ID:PF04745
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase 7 kDa subunit
Gene (Uniprot):OPG090
Chain IDs:H (auth: J)
Chain Length:63
Number of Molecules:1
Biological Source:Vaccinia virus
UniProt ID:P68315 Pfam ID:PF05864
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:mRNA-capping enzyme regulatory subunit OPG124
Gene (Uniprot):OPG124
Chain IDs:I (auth: L)
Chain Length:287
Number of Molecules:1
Biological Source:Vaccinia virus
UniProt ID:P20980 Pfam ID:PF03341
Polymer Type:polydeoxyribonucleotide
Molecule:Non-template DNA oligomer
Chain IDs:J (auth: N)
Chain Length:70
Number of Molecules:1
Biological Source:Vaccinia virus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:mRNA-capping enzyme catalytic subunit
Gene (Uniprot):OPG113
Chain IDs:K (auth: O)
Chain Length:844
Number of Molecules:1
Biological Source:Vaccinia virus
UniProt ID:P20979 Pfam ID:PF10640, PF21004, PF21005, PF03291
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase 30 kDa polypeptide
Gene (Uniprot):OPG066
Chain IDs:L (auth: S)
Chain Length:259
Number of Molecules:1
Biological Source:Vaccinia virus
UniProt ID:P21082 Pfam ID:PF12410, PF01096
Polymer Type:polydeoxyribonucleotide
Molecule:Template DNA oligomer
Chain IDs:M (auth: T)
Chain Length:70
Number of Molecules:1
Biological Source:Vaccinia virus
Ligand Molecules
MG
ZN
Primary Citation
Cryo EM map and model of the vaccinia RNA polymerase intermediate pre-initiation open promoter complex (CASP target)
To Be Published ? ? ? (?)
Primary Citation of related structures
8P0J