8OXZ image
Deposition Date 2023-05-03
Release Date 2024-11-13
Last Version Date 2025-11-26
Entry Detail
PDB ID:
8OXZ
Keywords:
Title:
Rat alpha5beta1 integrin, headpiece
Biological Source:
Source Organism(s):
Method Details:
Experimental Method:
Resolution:
3.70 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Integrin subunit alpha 5
Gene (Uniprot):Itga5
Chain IDs:A (auth: P)
Chain Length:1099
Number of Molecules:1
Biological Source:Rattus norvegicus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Integrin beta-1
Gene (Uniprot):Itgb1
Chain IDs:B (auth: Q)
Chain Length:799
Number of Molecules:1
Biological Source:Rattus norvegicus
Ligand Molecules
Primary Citation
Spatial N-glycan rearrangement on alpha 5 beta 1 integrin nucleates galectin-3 oligomers to determine endocytic fate.
Nat Commun 16 9461 9461 (2025)
PMID: 41145507 DOI: 10.1038/s41467-025-64523-7

Abstact

Membrane glycoproteins frequently adopt different conformations when altering between active and inactive states. Here, we discover a molecular switch that exploits dynamic spatial rearrangements of N-glycans during such conformational transitions to control protein function. For the conformationally switchable cell adhesion glycoprotein α5β1 integrin, we find that only the bent-closed state arranges N-glycans to nucleate the formation of up to tetrameric oligomers of the glycan-binding protein galectin-3. We propose a structural model of how these galectin-3 oligomers are built and how they clamp the bent-closed state to select it for endocytic uptake and subsequent retrograde trafficking to the Golgi for polarized distribution in cells. Our findings reveal the dynamic regulation of the glycan landscape at the cell surface to achieve oligomerization of galectin-3. Galectin-3 oligomers are thereby identified as functional decoders of defined spatial patterns of N-glycans on specifically the bent-closed conformational state of α5β1 integrin and possibly other integrin family members.

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Disease

Primary Citation of related structures
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