8OU8 image
Entry Detail
PDB ID:
8OU8
Title:
Crystal structure of E. coli threonyl tRNA synthetase in complex with a TM84 analogue
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2023-04-22
Release Date:
2023-07-12
Method Details:
Experimental Method:
Resolution:
2.05 Å
R-Value Free:
0.26
R-Value Work:
0.18
R-Value Observed:
0.21
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Threonine--tRNA ligase
Chain IDs:A (auth: D), B (auth: A)
Chain Length:411
Number of Molecules:2
Biological Source:Escherichia coli IAI1
Primary Citation
Synthesis and evaluation of an agrocin 84 toxic moiety (TM84) analogue as a malarial threonyl tRNA synthetase inhibitor.
Org.Biomol.Chem. 21 5433 5439 (2023)
PMID: 37335076 DOI: 10.1039/d3ob00670k

Abstact

An analogue of a toxic moiety (TM84) of natural product agrocin 84 containing threonine amide instead of 2,3-dihydroxy-4-methylpentanamide was prepared and evaluated as a putative Plasmodium falciparum threonyl t-RNA synthetase (PfThrRS) inhibitor. This TM84 analogue features submicromolar inhibitory potency (IC50 = 440 nM) comparable to that of borrelidin (IC50 = 43 nM) and therefore complements chemotypes known to inhibit malarial PfThrRS, which are currently limited to borrelidin and its analogues. The crystal structure of the inhibitor in complex with the E. coli homologue enzyme (EcThrRS) was obtained, revealing crucial ligand-protein interactions that will pave the way for the design of novel ThrRS inhibitors.

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