8OR1 image
Entry Detail
PDB ID:
8OR1
Keywords:
Title:
Co-crystal strucutre of PD-L1 with low molecular weight inhibitor
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2023-04-12
Release Date:
2023-08-02
Method Details:
Experimental Method:
Resolution:
3.50 Å
R-Value Free:
0.29
R-Value Work:
0.29
R-Value Observed:
0.29
Space Group:
P 31 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Programmed cell death 1 ligand 1
Chain IDs:A, B
Chain Length:116
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Design, Synthesis, and Antitumor Activity Evaluation of 2-Arylmethoxy-4-(2,2'-dihalogen-substituted biphenyl-3-ylmethoxy) Benzylamine Derivatives as Potent PD-1/PD-L1 Inhibitors.
J.Med.Chem. 66 10579 10603 (2023)
PMID: 37496104 DOI: 10.1021/acs.jmedchem.3c00731

Abstact

Novel 2-arylmethoxy-4-(2,2'-dihalogen-substituted biphenyl-3-ylmethoxy) benzylamine derivatives were designed, synthesized, and evaluated in vitro and in vivo against cancers as PD-1/PD-L1 inhibitors. Through the computer-aided structural optimization and the homogeneous time-resolved fluorescence (HTRF) assay, compound A56 was found to most strongly block the PD-1/PD-L1 interaction with an IC50 value of 2.4 ± 0.8 nM and showed the most potent activity. 1H NMR titration results indicated that A56 can tightly bind to the PD-L1 protein with KD < 1 μM. The X-ray diffraction data for the cocrystal structure of the A56/PD-L1 complex (3.5 Å) deciphered a novel binding mode in detail, which can account for its most potent inhibitory activity. Cell-based assays further demonstrated the strong ability of A56 as an hPD-1/hPD-L1 blocker. Especially in an hPD-L1 MC38 humanized mouse model, A56 significantly inhibited tumor growth without obvious toxicity, with a TGI rate of 55.20% (50 mg/kg, i.g.). In conclusion, A56 is a promising clinical candidate worthy of further development.

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Primary Citation of related structures