8OQ3 image
Entry Detail
PDB ID:
8OQ3
EMDB ID:
Keywords:
Title:
Structure of methylamine treated human complement C3
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2023-04-11
Release Date:
2024-02-21
Method Details:
Experimental Method:
Resolution:
2.90 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Complement C3
Chain IDs:A, C (auth: D)
Chain Length:1641
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:nanobody hC3Nb1 with mutation
Chain IDs:B (auth: C), D (auth: F)
Chain Length:129
Number of Molecules:2
Biological Source:Lama glama
Ligand Molecules
Primary Citation
Cryo-EM analysis of complement C3 reveals a reversible major opening of the macroglobulin ring.
Nat.Struct.Mol.Biol. ? ? ? (2025)
PMID: 39849196 DOI: 10.1038/s41594-024-01467-4

Abstact

The C3 protein is the central molecule within the complement system and undergoes proteolytic activation to C3b in the presence of pathogens. Pattern-independent activation of C3 also occurs via hydrolysis, resulting in C3(H2O), but the structural details of C3 hydrolysis remain elusive. Here we show that the conformation of the C3(H2O) analog, C3MA, is indistinguishable from C3b. In contrast, the reaction intermediate C3* adopts a conformation dramatically different from both C3 and C3MA. In C3*, unlocking of the macroglobulin (MG) 3 domain creates a large opening in the MG ring through which the anaphylatoxin (ANA) domain translocates through a transient opening. C3MA formation is inhibited by an MG3-specific nanobody and prevented by linking the ANA domain to the C3 β-chain. Our study reveals an unexpected dynamic behavior of C3 and forms the basis for elucidation of the in vivo contribution of C3 hydrolysis and for controlling complement upon intravascular hemolysis and surface-contact-induced activation.

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Primary Citation of related structures