8OQ0 image
Entry Detail
PDB ID:
8OQ0
Keywords:
Title:
Crystal structure of tailspike depolymerase (APK09_gp48) from Acinetobacter phage APK09
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2023-04-10
Release Date:
2023-05-31
Method Details:
Experimental Method:
Resolution:
2.59 Å
R-Value Free:
0.27
R-Value Work:
0.18
R-Value Observed:
0.19
Space Group:
H 3 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Tailspike protein
Chain IDs:A
Chain Length:616
Number of Molecules:1
Biological Source:Acinetobacter phage APK09
Ligand Molecules
Primary Citation
Friunavirus Phage-Encoded Depolymerases Specific to Different Capsular Types of Acinetobacter baumannii .
Int J Mol Sci 24 ? ? (2023)
PMID: 37240444 DOI: 10.3390/ijms24109100

Abstact

Acinetobacter baumannii is a critical priority nosocomial pathogen that produces a variety of capsular polysaccharides (CPSs), the primary receptors for specific depolymerase-carrying phages. In this study, the tailspike depolymerases (TSDs) encoded in genomes of six novel Friunaviruses, APK09, APK14, APK16, APK86, APK127v, APK128, and one previously described Friunavirus phage, APK37.1, were characterized. For all TSDs, the mechanism of specific cleavage of corresponding A. baumannii capsular polysaccharides (CPSs) was established. The structures of oligosaccharide fragments derived from K9, K14, K16, K37/K3-v1, K86, K127, and K128 CPSs degradation by the recombinant depolymerases have been determined. The crystal structures of three of the studied TSDs were obtained. A significant reduction in mortality of Galleria mellonella larvae infected with A. baumannii of K9 capsular type was shown in the example of recombinant TSD APK09_gp48. The data obtained will provide a better understanding of the interaction of phage-bacterial host systems and will contribute to the formation of principles of rational usage of lytic phages and phage-derived enzymes as antibacterial agents.

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Primary Citation of related structures