8OO2 image
Deposition Date 2023-04-04
Release Date 2023-08-02
Last Version Date 2023-10-04
Entry Detail
PDB ID:
8OO2
Keywords:
Title:
ChdA complex with amido-chelocardin
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.85 Å
R-Value Free:
0.21
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative transcriptional regulator
Gene (Uniprot):chdA
Chain IDs:A, B
Chain Length:194
Number of Molecules:2
Biological Source:Amycolatopsis sulphurea
Primary Citation
Revision of the Absolute Configurations of Chelocardin and Amidochelocardin.
Angew.Chem.Int.Ed.Engl. 62 e202306437 e202306437 (2023)
PMID: 37466921 DOI: 10.1002/anie.202306437

Abstact

Even with the aid of the available methods, the configurational assignment of natural products can be a challenging task that is prone to errors, and it sometimes needs to be corrected after total synthesis or single-crystal X-ray diffraction (XRD) analysis. Herein, the absolute configuration of amidochelocardin is revised using a combination of XRD, NMR spectroscopy, experimental ECD spectra, and time-dependent density-functional theory (TDDFT)-ECD calculations. As amidochelocardin was obtained via biosynthetic engineering of chelocardin, we propose the same absolute configuration for chelocardin based on the similar biosynthetic origins of the two compounds and result of TDDFT-ECD calculations. The evaluation of spectral data of two closely related analogues, 6-desmethyl-chelocardin and its semisynthetic derivative 1, also supports this conclusion.

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Primary Citation of related structures