8ONT image
Entry Detail
PDB ID:
8ONT
EMDB ID:
Title:
Structure of Setaria italica NRAT in complex with a nanobody
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2023-04-03
Release Date:
2023-04-12
Method Details:
Experimental Method:
Resolution:
3.66 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:NRAMP related aluminium transporter
Chain IDs:A
Chain Length:552
Number of Molecules:1
Biological Source:Setaria italica
Polymer Type:polypeptide(L)
Description:Nanobody1
Chain IDs:B
Chain Length:122
Number of Molecules:1
Biological Source:Lama glama
Ligand Molecules
Primary Citation
Structural and functional properties of a plant NRAMP-related aluminum transporter.
Elife 12 ? ? (2023)
PMID: 37074929 DOI: 10.7554/eLife.85641

Abstact

The transport of transition metal ions by members of the SLC11/NRAMP family constitutes a ubiquitous mechanism for the uptake of Fe2+ and Mn2+ across all kingdoms of life. Despite the strong conservation of the family, two of its branches have evolved a distinct substrate preference with one mediating Mg2+ uptake in prokaryotes and another the transport of Al3+ into plant cells. Our previous work on the SLC11 transporter from Eggerthella lenta revealed the basis for its Mg2+ selectivity (Ramanadane et al., 2022). Here, we have addressed the structural and functional properties of a putative Al3+ transporter from Setaria italica. We show that the protein transports diverse divalent metal ions and binds the trivalent ions Al3+ and Ga3+, which are both presumable substrates. Its cryo-electron microscopy (cryo-EM) structure displays an occluded conformation that is closer to an inward- than an outward-facing state, with a binding site that is remodeled to accommodate the increased charge density of its transported substrate.

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Primary Citation of related structures