8OMY image
Deposition Date 2023-03-31
Release Date 2023-12-06
Last Version Date 2023-12-06
Entry Detail
PDB ID:
8OMY
Keywords:
Title:
NI,FE-CODH -600mV state : 35 min Dioxygen Exposure
Biological Source:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.37 Å
R-Value Free:
0.15
R-Value Work:
0.12
R-Value Observed:
0.12
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Carbon monoxide dehydrogenase 2
Gene (Uniprot):cooS2
Chain IDs:A (auth: X)
Chain Length:636
Number of Molecules:1
Biological Source:Carboxydothermus hydrogenoformans Z-2901
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
CSO A CYS modified residue
Primary Citation
Stepwise O 2 -Induced Rearrangement and Disassembly of the [NiFe 4 (OH)( mu 3 -S) 4 ] Active Site Cluster of CO Dehydrogenase.
Angew.Chem.Int.Ed.Engl. 62 e202305341 e202305341 (2023)
PMID: 37279092 DOI: 10.1002/anie.202305341

Abstact

Ni,Fe-containing carbon monoxide dehydrogenases (CODHs) catalyze the reversible reduction of carbon dioxide to carbon monoxide. CODHs are found in anaerobic microorganisms and can rapidly lose their activity when exposed to air. What causes the loss of activity is unclear. In this study, we analyzed the time-dependent structural changes induced by the presence of air on the metal centers of CODH-II. We show that inactivation is a multistep process. In a reversible step, the open coordination site on the Ni ion is blocked by a Ni,Fe-bridging μ-sulfido or chlorido ligand. Blocking this open coordination site with a cyanide ligand stabilizes the cluster against O2 -induced decomposition, indicating that O2 attacks at the Ni ion. In the subsequent irreversible phase, nickel is lost, the Fe ions rearrange and the sulfido ligands disappear. Our data are consistent with a reversible reductive reactivation mechanism to protect CODHs from transient over-oxidation.

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