8OMR image
Deposition Date 2023-03-31
Release Date 2023-12-20
Last Version Date 2025-07-09
Entry Detail
PDB ID:
8OMR
Title:
Human tRNA guanine transglycosylase (TGT) bound to tRNAAsp
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.30 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Queuine tRNA-ribosyltransferase catalytic subunit 1
Gene (Uniprot):QTRT1
Chain IDs:A
Chain Length:405
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Queuine tRNA-ribosyltransferase accessory subunit 2
Gene (Uniprot):QTRT2
Chain IDs:B
Chain Length:415
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polyribonucleotide
Molecule:tRNAAsp
Mutagens:U1A, C2G, C3G, G69C, G70C, A71U
Chain IDs:C
Chain Length:75
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Structural and functional insights into tRNA recognition by human tRNA guanine transglycosylase.
Structure 32 316 ? (2024)
PMID: 38181786 DOI: 10.1016/j.str.2023.12.006

Abstact

Eukaryotic tRNA guanine transglycosylase (TGT) is an RNA-modifying enzyme which catalyzes the base exchange of the genetically encoded guanine 34 of tRNAsAsp,Asn,His,Tyr for queuine, a hypermodified 7-deazaguanine derivative. Eukaryotic TGT is a heterodimer comprised of a catalytic and a non-catalytic subunit. While binding of the tRNA anticodon loop to the active site is structurally well understood, the contribution of the non-catalytic subunit to tRNA binding remained enigmatic, as no complex structure with a complete tRNA was available. Here, we report a cryo-EM structure of eukaryotic TGT in complex with a complete tRNA, revealing the crucial role of the non-catalytic subunit in tRNA binding. We decipher the functional significance of these additional tRNA-binding sites, analyze solution state conformation, flexibility, and disorder of apo TGT, and examine conformational transitions upon tRNA binding.

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Primary Citation of related structures
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