8OLU image
Deposition Date 2023-03-30
Release Date 2023-08-09
Last Version Date 2023-08-23
Entry Detail
PDB ID:
8OLU
Title:
Leishmania tarentolae proteasome 20S subunit in complex with 1-Benzyl-N-(3-(cyclopropylcarbamoyl)phenyl)-6-oxo-1,6-dihydropyridazine-3-carboxamide
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.59 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Proteasome subunit alpha type
Gene (Uniprot):LtaPh_3548400
Chain IDs:A, O
Chain Length:339
Number of Molecules:2
Biological Source:Leishmania tarentolae
Polymer Type:polypeptide(L)
Molecule:Proteasome subunit alpha type
Gene (Uniprot):LtaPh_2120300
Chain IDs:B, P
Chain Length:231
Number of Molecules:2
Biological Source:Leishmania tarentolae
Polymer Type:polypeptide(L)
Molecule:Proteasome subunit alpha type
Gene (Uniprot):LtaPh_1402900
Chain IDs:C, Q
Chain Length:285
Number of Molecules:2
Biological Source:Leishmania tarentolae
Polymer Type:polypeptide(L)
Molecule:Proteasome subunit alpha type
Gene (Uniprot):LtaPh_1102600, LtaPh_9916201
Chain IDs:D, R
Chain Length:248
Number of Molecules:2
Biological Source:Leishmania tarentolae
Polymer Type:polypeptide(L)
Molecule:Proteasome alpha 5 subunit, putative
Gene (Uniprot):LtaPh_2121400
Chain IDs:E, S
Chain Length:344
Number of Molecules:2
Biological Source:Leishmania tarentolae
Polymer Type:polypeptide(L)
Molecule:Proteasome alpha 1 subunit, putative
Gene (Uniprot):LtaPh_3616000
Chain IDs:F, T
Chain Length:428
Number of Molecules:2
Biological Source:Leishmania tarentolae
Polymer Type:polypeptide(L)
Molecule:Proteasome alpha 7 subunit, putative
Gene (Uniprot):LtaPh_2701900
Chain IDs:G, U
Chain Length:238
Number of Molecules:2
Biological Source:Leishmania tarentolae
Polymer Type:polypeptide(L)
Molecule:Proteasome subunit beta
Gene (Uniprot):LtaPh_1200300
Chain IDs:H, V
Chain Length:283
Number of Molecules:2
Biological Source:Leishmania tarentolae
Polymer Type:polypeptide(L)
Molecule:Proteasome subunit beta
Gene (Uniprot):LtaPh_3538500
Chain IDs:I, W
Chain Length:254
Number of Molecules:2
Biological Source:Leishmania tarentolae
Polymer Type:polypeptide(L)
Molecule:Proteasome subunit beta
Gene (Uniprot):LtaPh_2801100
Chain IDs:J, X
Chain Length:205
Number of Molecules:2
Biological Source:Leishmania tarentolae
Polymer Type:polypeptide(L)
Molecule:Proteasome subunit beta
Gene (Uniprot):LtaPh_3603100
Chain IDs:K, Y
Chain Length:206
Number of Molecules:2
Biological Source:Leishmania tarentolae
Polymer Type:polypeptide(L)
Molecule:Proteasome subunit beta
Gene (Uniprot):LtaPh_3616400
Chain IDs:L, Z
Chain Length:301
Number of Molecules:2
Biological Source:Leishmania tarentolae
Polymer Type:polypeptide(L)
Molecule:Proteasome beta 6 subunit, putative
Gene (Uniprot):LtaPh_0601100
Chain IDs:M, AA (auth: a)
Chain Length:339
Number of Molecules:2
Biological Source:Leishmania tarentolae
Polymer Type:polypeptide(L)
Molecule:Proteasome subunit beta
Gene (Uniprot):LtaPh_2716500, LtaPh_3442751
Chain IDs:N, BA (auth: b)
Chain Length:231
Number of Molecules:2
Biological Source:Leishmania tarentolae
Ligand Molecules
Primary Citation

Abstact

There is an urgent need for new treatments for Chagas disease, a parasitic infection which mostly impacts South and Central America. We previously reported on the discovery of GSK3494245/DDD01305143, a preclinical candidate for visceral leishmaniasis which acted through inhibition of the Leishmania proteasome. A related analogue, active against Trypanosoma cruzi, showed suboptimal efficacy in an animal model of Chagas disease, so alternative proteasome inhibitors were investigated. Screening a library of phenotypically active analogues against the T. cruzi proteasome identified an active, selective pyridazinone, the development of which is described herein. We obtained a cryo-EM co-structure of proteasome and a key inhibitor and used this to drive optimization of the compounds. Alongside this, optimization of the absorption, distribution, metabolism, and excretion (ADME) properties afforded a suitable compound for mouse efficacy studies. The outcome of these studies is discussed, alongside future plans to further understand the series and its potential to deliver a new treatment for Chagas disease.

Legend

Protein

Chemical

Disease

Primary Citation of related structures