8OID image
Entry Detail
PDB ID:
8OID
EMDB ID:
Title:
Cryo-EM structure of ADP-bound, filamentous beta-actin harboring the N111S mutation
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2023-03-22
Release Date:
2023-08-09
Method Details:
Experimental Method:
Resolution:
2.30 Å
Aggregation State:
FILAMENT
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Actin, cytoplasmic 1, N-terminally processed
Mutations:N111S, C272A
Chain IDs:A (auth: C), B (auth: A), C (auth: B), D, E
Chain Length:375
Number of Molecules:5
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
HIC A HIS modified residue
Primary Citation
Molecular mechanisms of inorganic-phosphate release from the core and barbed end of actin filaments.
Nat.Struct.Mol.Biol. 30 1774 1785 (2023)
PMID: 37749275 DOI: 10.1038/s41594-023-01101-9

Abstact

The release of inorganic phosphate (Pi) from actin filaments constitutes a key step in their regulated turnover, which is fundamental to many cellular functions. The mechanisms underlying Pi release from the core and barbed end of actin filaments remain unclear. Here, using human and bovine actin isoforms, we combine cryo-EM with molecular-dynamics simulations and in vitro reconstitution to demonstrate how actin releases Pi through a 'molecular backdoor'. While constantly open at the barbed end, the backdoor is predominantly closed in filament-core subunits and opens only transiently through concerted amino acid rearrangements. This explains why Pi escapes rapidly from the filament end but slowly from internal subunits. In a nemaline-myopathy-associated actin variant, the backdoor is predominantly open in filament-core subunits, resulting in accelerated Pi release and filaments with drastically shortened ADP-Pi caps. Our results provide the molecular basis for Pi release from actin and exemplify how a disease-linked mutation distorts the nucleotide-state distribution and atomic structure of the filament.

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Primary Citation of related structures