8OI6 image
Deposition Date 2023-03-22
Release Date 2023-08-09
Last Version Date 2023-11-22
Entry Detail
PDB ID:
8OI6
Title:
Cryo-EM structure of the undecorated barbed end of filamentous beta/gamma actin
Biological Source:
Source Organism:
Amanita phalloides (Taxon ID: 67723)
Bos taurus (Taxon ID: 9913)
Method Details:
Experimental Method:
Resolution:
3.59 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Actin, cytoplasmic 1
Gene (Uniprot):ACTB
Chain IDs:A, B, C, D
Chain Length:375
Number of Molecules:4
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Molecule:PHALLOIDIN
Chain IDs:E (auth: H), F (auth: I), G (auth: J)
Chain Length:7
Number of Molecules:3
Biological Source:Amanita phalloides
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
HIC A HIS modified residue
Peptide-like Molecules
PRD_002366
Primary Citation
Molecular mechanisms of inorganic-phosphate release from the core and barbed end of actin filaments.
Nat.Struct.Mol.Biol. 30 1774 1785 (2023)
PMID: 37749275 DOI: 10.1038/s41594-023-01101-9

Abstact

The release of inorganic phosphate (Pi) from actin filaments constitutes a key step in their regulated turnover, which is fundamental to many cellular functions. The mechanisms underlying Pi release from the core and barbed end of actin filaments remain unclear. Here, using human and bovine actin isoforms, we combine cryo-EM with molecular-dynamics simulations and in vitro reconstitution to demonstrate how actin releases Pi through a 'molecular backdoor'. While constantly open at the barbed end, the backdoor is predominantly closed in filament-core subunits and opens only transiently through concerted amino acid rearrangements. This explains why Pi escapes rapidly from the filament end but slowly from internal subunits. In a nemaline-myopathy-associated actin variant, the backdoor is predominantly open in filament-core subunits, resulting in accelerated Pi release and filaments with drastically shortened ADP-Pi caps. Our results provide the molecular basis for Pi release from actin and exemplify how a disease-linked mutation distorts the nucleotide-state distribution and atomic structure of the filament.

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Primary Citation of related structures