8OI5 image
Entry Detail
PDB ID:
8OI5
Keywords:
RIBOSOME
Title:
Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)
Biological Source:
Source Organism:
Candida albicans
PDB Version:
Deposition Date:
2023-03-22
Release Date:
2024-10-09
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
2.90 Å
R-Value Free:
0.28
R-Value Work:
0.25
R-Value Observed:
0.25
Space Group:
P 1 21 1
8OI5 validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L20
Chain IDs:U (auth: 0), UC (auth: BN)
Chain Length:172
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:A0A1D8PLC9 Pfam ID:PF01775
Polymer Type:polyribonucleotide
Description:25S
Chain IDs:A (auth: 1), AC (auth: AS)
Chain Length:3359
Number of Molecules:2
Biological Source:Candida albicans
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L21-A
Chain IDs:V (auth: 2), VC (auth: BO)
Chain Length:160
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:A0A1D8PGY0 Pfam ID:PF01157
Polymer Type:polyribonucleotide
Description:5S
Chain IDs:B (auth: 3), BC (auth: AT)
Chain Length:121
Number of Molecules:2
Biological Source:Candida albicans
Polymer Type:polyribonucleotide
Description:5.8S
Chain IDs:C (auth: 4), CC (auth: AU)
Chain Length:158
Number of Molecules:2
Biological Source:Candida albicans
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L22-B
Chain IDs:W (auth: 5), WC (auth: BP)
Chain Length:124
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:A0A1D8PM41 Pfam ID:PF01776
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L23-A
Chain IDs:X (auth: 6), XC (auth: BQ)
Chain Length:137
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:A0A1D8PPT5 Pfam ID:PF00238
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L24-A
Chain IDs:Y (auth: 7), YC (auth: BR)
Chain Length:155
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:Q5A6A1 Pfam ID:PF01246
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L25
Chain IDs:Z (auth: 8), ZC (auth: BS)
Chain Length:142
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:A0A1D8PPS1 Pfam ID:PF03939, PF00276
Protein Blast
Polymer Type:polypeptide(L)
Description:Ribosomal protein L24
Chain IDs:AA (auth: 9), AD (auth: BT)
Chain Length:127
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:A0A1D8PCQ5 Pfam ID:PF16906
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L27
Chain IDs:BA (auth: AA), BD (auth: BU)
Chain Length:136
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:A0A1D8PFG4 Pfam ID:PF01777
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L28
Chain IDs:CA (auth: AB), CD (auth: BV)
Chain Length:149
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:A0A1D8PSC5 Pfam ID:PF00828
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L29
Chain IDs:DA (auth: AC), DD (auth: BW)
Chain Length:63
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:A0A1D8PF57 Pfam ID:PF01779
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L30
Chain IDs:EA (auth: AD), ED (auth: BX)
Chain Length:106
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:A0A1D8PM75 Pfam ID:PF01248
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L31-B
Chain IDs:FA (auth: AE), FD (auth: BY)
Chain Length:112
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:A0A1D8PHF5 Pfam ID:PF01198
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L32
Chain IDs:GA (auth: AF), GD (auth: BZ)
Chain Length:131
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:A0A1D8PPN6 Pfam ID:PF01655
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L33-A
Chain IDs:HA (auth: AG), HD (auth: CA)
Chain Length:107
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:A0A1D8PHH4 Pfam ID:PF01247
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L34-B
Chain IDs:IA (auth: AH), ID (auth: CB)
Chain Length:122
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:A0A1D8PDZ1 Pfam ID:PF01199
Protein Blast
Polymer Type:polypeptide(L)
Description:Ribosomal protein L29
Chain IDs:JA (auth: AI), JD (auth: CC)
Chain Length:120
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:A0A1D8PK30 Pfam ID:PF00831
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L36
Chain IDs:KA (auth: AJ), KD (auth: CD)
Chain Length:99
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:A0A1D8PH21 Pfam ID:PF01158
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L37-B
Chain IDs:LA (auth: AK), LD (auth: CE)
Chain Length:90
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:A0A1D8PF45 Pfam ID:PF01907
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L38
Chain IDs:MA (auth: AL), MD (auth: CF)
Chain Length:78
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:A0A1D8PG16 Pfam ID:PF01781
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L39
Chain IDs:NA (auth: AM), ND (auth: CG)
Chain Length:51
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:A0A1D8PDT4 Pfam ID:PF00832
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L40-B
Chain IDs:OA (auth: AN), OD (auth: CH)
Chain Length:52
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:A0A1D8PL68 Pfam ID:PF01020
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L41
Chain IDs:PA (auth: AO), PD (auth: CI)
Chain Length:25
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:P9WER7 Pfam ID:PF05162
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L42-B
Chain IDs:QA (auth: AP), QD (auth: CJ)
Chain Length:106
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:A0A1D8PEV4 Pfam ID:PF00935
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L43-A
Chain IDs:RA (auth: AQ), RD (auth: CK)
Chain Length:92
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:A0A1D8PP14 Pfam ID:PF01780
Protein Blast
Polymer Type:polypeptide(L)
Description:Guanine nucleotide-binding protein subunit beta-like protein
Chain IDs:ZB (auth: AR)
Chain Length:317
Number of Molecules:1
Biological Source:Candida albicans
UniProt ID:P83774 Pfam ID:PF00400
Polymer Type:polyribonucleotide
Description:18S
Chain IDs:SA (auth: B), SD (auth: CM)
Chain Length:1787
Number of Molecules:2
Biological Source:Candida albicans
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S0
Chain IDs:TA (auth: C), TD (auth: CN)
Chain Length:261
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:O42817 Pfam ID:PF00318
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S1
Chain IDs:UA (auth: D), UD (auth: CO)
Chain Length:256
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:P40910 Pfam ID:PF01015
Protein Blast
Polymer Type:polypeptide(L)
Description:Ribosomal protein S5
Chain IDs:VA (auth: E), VD (auth: CP)
Chain Length:249
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:Q5A900 Pfam ID:PF00333, PF03719
Protein Blast
Polymer Type:polypeptide(L)
Description:Ribosomal protein S3
Chain IDs:WA (auth: F), WD (auth: CQ)
Chain Length:251
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:A0A1D8PSV5 Pfam ID:PF07650, PF00189
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S4
Chain IDs:XA (auth: G), XD (auth: CR)
Chain Length:262
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:A0A1D8PCI6 Pfam ID:PF08071, PF01479, PF00900, PF00467, PF16121
Protein Blast
Polymer Type:polypeptide(L)
Description:Ribosomal protein S7
Chain IDs:YA (auth: H), YD (auth: CS)
Chain Length:225
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:Q5AG43 Pfam ID:PF00177
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S6
Chain IDs:ZA (auth: I), ZD (auth: CT)
Chain Length:236
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:A0A1D8PL99 Pfam ID:PF01092
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S7
Chain IDs:AB (auth: J), AE (auth: CU)
Chain Length:186
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:Q5AJ93 Pfam ID:PF01251
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S8
Chain IDs:BB (auth: K), BE (auth: CV)
Chain Length:206
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:Q59T44 Pfam ID:PF01201
Protein Blast
Polymer Type:polypeptide(L)
Description:Ribosomal protein S4
Chain IDs:CB (auth: L), CE (auth: CW)
Chain Length:189
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:A0A1D8PGY8 Pfam ID:PF00163, PF01479
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S10-A
Chain IDs:DB (auth: M), DE (auth: CX)
Chain Length:118
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:A0A1D8PI15 Pfam ID:PF03501
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S11A
Chain IDs:EB (auth: N), EE (auth: CY)
Chain Length:155
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:A0A1D8PN83 Pfam ID:PF16205, PF00366
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S12
Chain IDs:FB (auth: O), FE (auth: CZ)
Chain Length:143
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:Q5ADQ6 Pfam ID:PF01248
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S13
Chain IDs:GB (auth: P), GE (auth: DA)
Chain Length:151
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:A0A1D8PPE0 Pfam ID:PF08069, PF00312
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S14-A
Chain IDs:HB (auth: Q), HE (auth: DB)
Chain Length:132
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:A0A1D8PDT3 Pfam ID:PF00411
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S15
Chain IDs:IB (auth: R), IE (auth: DC)
Chain Length:142
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:A0A1D8PK22 Pfam ID:PF00203
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S16
Chain IDs:JB (auth: S), JE (auth: DD)
Chain Length:142
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:A0A1D8PCW6 Pfam ID:PF00380
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S17-B
Chain IDs:KB (auth: T), KE (auth: DE)
Chain Length:137
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:A0A1D8PEY9 Pfam ID:PF00833
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S18-B
Chain IDs:LB (auth: U), LE (auth: DF)
Chain Length:145
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:A0A1D8PQQ5 Pfam ID:PF00416
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S19-A
Chain IDs:MB (auth: V), ME (auth: DG)
Chain Length:145
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:A0A1D8PK61 Pfam ID:PF01090
Protein Blast
Polymer Type:polypeptide(L)
Description:Ribosomal protein S10
Chain IDs:NB (auth: W), NE (auth: DH)
Chain Length:119
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:Q5A389 Pfam ID:PF00338
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S21
Chain IDs:OB (auth: X), OE (auth: DI)
Chain Length:87
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:A0A1D8PCG7 Pfam ID:PF01249
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S22-A
Chain IDs:PB (auth: Y), PE (auth: DJ)
Chain Length:130
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:Q96W54 Pfam ID:PF00410
Protein Blast
Polymer Type:polypeptide(L)
Description:Ribosomal protein S23 (S12)
Chain IDs:QB (auth: Z), QE (auth: DK)
Chain Length:145
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:A0A1D8PDU3 Pfam ID:PF00164
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S24
Chain IDs:RB (auth: a), RE (auth: DL)
Chain Length:135
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:Q5A7K0 Pfam ID:PF01282
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S25
Chain IDs:SB (auth: b), SE (auth: DM)
Chain Length:1787
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:A0A1D8PNQ6 Pfam ID:PF03297
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S26
Chain IDs:TB (auth: c), TE (auth: DN)
Chain Length:261
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:Q5ALV6 Pfam ID:PF01283
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S27
Chain IDs:UB (auth: d), UE (auth: DO)
Chain Length:256
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:A0A1D8PTI7 Pfam ID:PF01667
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S28-B
Chain IDs:VB (auth: e), VE (auth: DP)
Chain Length:67
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:A0A1D8PQN0 Pfam ID:PF01200
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S29A
Chain IDs:WB (auth: f), WE (auth: DQ)
Chain Length:56
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:A0A1D8PTR4 Pfam ID:PF00253
Protein Blast
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S30
Chain IDs:XB (auth: g), XE (auth: DR)
Chain Length:63
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:A0A1D8PSK2 Pfam ID:PF04758
Protein Blast
Polymer Type:polypeptide(L)
Description:Ubiquitin-40S ribosomal protein S31 fusion protein
Chain IDs:YB (auth: h)
Chain Length:193
Number of Molecules:1
Biological Source:Candida albicans
UniProt ID:Q5A109 Pfam ID:PF00240, PF01599
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein CAALFM_C304810CA
Chain IDs:YE (auth: i), ZE (auth: CL)
Chain Length:267
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:A0A1D8PK71 Pfam ID:PF09598
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L2-B
Chain IDs:D (auth: j), DC (auth: AW)
Chain Length:254
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:A0A1D8PF08 Pfam ID:PF00181, PF03947
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L3
Chain IDs:E (auth: k), EC (auth: AX)
Chain Length:389
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:Q59LS1 Pfam ID:PF00297
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L4-B
Chain IDs:F (auth: l), FC (auth: AY)
Chain Length:363
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:A0A1D8PFV1 Pfam ID:PF00573, PF14374
Protein Blast
Polymer Type:polypeptide(L)
Description:Uncharacterized protein CaJ7.0206
Chain IDs:G (auth: m), GC (auth: AZ)
Chain Length:298
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:Q5AGZ7 Pfam ID:PF17144, PF14204
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L6
Chain IDs:H (auth: n), HC (auth: BA)
Chain Length:176
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:A0A1D8PCX8 Pfam ID:PF01159
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L7-A
Chain IDs:I (auth: o), IC (auth: BB)
Chain Length:241
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:A0A1D8PDL6 Pfam ID:PF08079, PF00327
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L8
Chain IDs:J (auth: p), JC (auth: BC)
Chain Length:262
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:Q5ANA1 Pfam ID:PF01248
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L9-B
Chain IDs:K (auth: q), KC (auth: BD)
Chain Length:191
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:Q5AEN2 Pfam ID:PF00347
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L10
Chain IDs:L (auth: r), LC (auth: BE)
Chain Length:220
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:Q5AIB8 Pfam ID:PF00252
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L11-B
Chain IDs:M (auth: s), MC (auth: BF)
Chain Length:174
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:A0A1D8PHW1 Pfam ID:PF00281, PF00673
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L13
Chain IDs:N (auth: t), NC (auth: BG)
Chain Length:202
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:O59931 Pfam ID:PF01294
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L14-B
Chain IDs:O (auth: u), OC (auth: BH)
Chain Length:131
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:A0A1D8PFL9 Pfam ID:PF01929
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L15-A
Chain IDs:P (auth: v), PC (auth: BI)
Chain Length:204
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:Q5A6R1 Pfam ID:PF00827
Protein Blast
Polymer Type:polypeptide(L)
Description:Ribosomal protein L13
Chain IDs:Q (auth: w), QC (auth: BJ)
Chain Length:200
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:Q5AB87 Pfam ID:PF00572
Protein Blast
Polymer Type:polypeptide(L)
Description:Ribosomal protein L22
Chain IDs:R (auth: x), RC (auth: BK)
Chain Length:185
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:Q59TE0 Pfam ID:PF00237
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L18-A
Chain IDs:S (auth: y), SC (auth: BL)
Chain Length:186
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:A0A1D8PK43 Pfam ID:PF17135
Protein Blast
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L19-A
Chain IDs:T (auth: z), TC (auth: BM)
Chain Length:190
Number of Molecules:2
Biological Source:Candida albicans
UniProt ID:A0A1D8PK40 Pfam ID:PF01280
Ligand Molecules
3K5
MG
PAR
ZN
Primary Citation
Mechanism of read-through enhancement by aminoglycosides and mefloquine
Proc.Natl.Acad.Sci.USA ? ? ? (2025)
DOI: 10.1073/pnas.2420261122
Primary Citation of related structures
8CQ7
8CQW
8CRE
8OEQ
8OH6
8OGJ