8OH9 image
Entry Detail
PDB ID:
8OH9
EMDB ID:
Title:
Cryo-EM structure of the electron bifurcating transhydrogenase StnABC complex from Sporomusa Ovata (state 1)
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2023-03-20
Release Date:
2023-09-13
Method Details:
Experimental Method:
Resolution:
3.20 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:NAD-dependent formate dehydrogenase gamma subunit
Chain IDs:A, D, G, J
Chain Length:178
Number of Molecules:4
Biological Source:Sporomusa ovata DSM 2662
Polymer Type:polypeptide(L)
Description:NAD-reducing hydrogenase subunit HoxF
Chain IDs:B, E, H, K
Chain Length:584
Number of Molecules:4
Biological Source:Sporomusa ovata DSM 2662
Polymer Type:polypeptide(L)
Description:Formate dehydrogenase-O, major subunit
Chain IDs:C, F, I, L
Chain Length:1172
Number of Molecules:4
Biological Source:Sporomusa ovata DSM 2662
Primary Citation
Molecular architecture and electron transfer pathway of the Stn family transhydrogenase.
Nat Commun 14 5484 5484 (2023)
PMID: 37673911 DOI: 10.1038/s41467-023-41212-x

Abstact

The challenge of endergonic reduction of NADP+ using NADH is overcome by ferredoxin-dependent transhydrogenases that employ electron bifurcation for electron carrier adjustments in the ancient Wood-Ljungdahl pathway. Recently, an electron-bifurcating transhydrogenase with subunit compositions distinct from the well-characterized Nfn-type transhydrogenase was described: the Stn complex. Here, we present the single-particle cryo-EM structure of the Stn family transhydrogenase from the acetogenic bacterium Sporomusa ovata and functionally dissect its electron transfer pathway. Stn forms a tetramer consisting of functional heterotrimeric StnABC complexes. Our findings demonstrate that the StnAB subunits assume the structural and functional role of a bifurcating module, homologous to the HydBC core of the electron-bifurcating HydABC complex. Moreover, StnC contains a NuoG-like domain and a GltD-like NADPH binding domain that resembles the NfnB subunit of the NfnAB complex. However, in contrast to NfnB, StnC lost the ability to bifurcate electrons. Structural comparison allows us to describe how the same fold on one hand evolved bifurcation activity on its own while on the other hand combined with an associated bifurcating module, exemplifying modular evolution in anaerobic metabolism to produce activities critical for survival at the thermodynamic limit of life.

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