8OF8 image
Deposition Date 2023-03-14
Release Date 2024-09-25
Last Version Date 2025-04-09
Entry Detail
PDB ID:
8OF8
Keywords:
Title:
Cryo-EM structure of actomyosin-5a-S1 with the full-length lever (nucleotide free)
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
7.50 Å
Aggregation State:
HELICAL ARRAY
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Calmodulin-1
Gene (Uniprot):Calm1
Chain IDs:A, B, C, D, E, F
Chain Length:148
Number of Molecules:6
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:Actin, alpha skeletal muscle
Gene (Uniprot):ACTA1
Chain IDs:G (auth: J), H (auth: K), I (auth: L)
Chain Length:375
Number of Molecules:3
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:Unconventional myosin-Va
Gene (Uniprot):Myo5a
Chain IDs:J (auth: M)
Chain Length:915
Number of Molecules:1
Biological Source:Mus musculus
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
HIC G HIS modified residue
Ligand Molecules
Primary Citation
Exploiting cryo-EM structures of actomyosin-5a to reveal the physical properties of its lever.
Structure 32 2316 2324.e6 (2024)
PMID: 39454567 DOI: 10.1016/j.str.2024.09.025

Abstact

Myosin 5a (Myo5a) is a dimeric processive motor protein that transports cellular cargos along filamentous actin (F-actin). Its long lever is responsible for its large power-stroke, step size, and load-bearing ability. Little is known about the levers' structure and physical properties, and how they contribute to walking mechanics. Using cryoelectron microscopy (cryo-EM) and molecular dynamics (MD) simulations, we resolved the structure of monomeric Myo5a, comprising the motor domain and full-length lever, bound to F-actin. The range of its lever conformations revealed its physical properties, how stiffness varies along its length and predicts a large, 35 nm, working stroke. Thus, the newly released trail head in a dimeric Myo5a would only need to perform a small diffusive search for its new binding site on F-actin, and stress would only be generated across the dimer once phosphate is released from the lead head, revealing new insight into the walking behavior of Myo5a.

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Primary Citation of related structures