8ODW image
Deposition Date 2023-03-09
Release Date 2023-05-31
Last Version Date 2023-08-30
Entry Detail
PDB ID:
8ODW
Title:
Crystal structure of LbmA Ox-ACP didomain in complex with NADP and ethyl glycinate from the lobatamide PKS (Gynuella sunshinyii)
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.07 Å
R-Value Free:
0.29
R-Value Work:
0.23
R-Value Observed:
0.24
Space Group:
P 65 2 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Polyketide synthase modules-related protein
Gene (Uniprot):YC6258_03642
Chain IDs:A, B
Chain Length:639
Number of Molecules:2
Biological Source:Gynuella sunshinyii
Primary Citation
Modular Oxime Formation by a trans-AT Polyketide Synthase.
Angew.Chem.Int.Ed.Engl. 62 e202304481 e202304481 (2023)
PMID: 37216334 DOI: 10.1002/anie.202304481

Abstact

Modular trans-acyltransferase polyketide synthases (trans-AT PKSs) are enzymatic assembly lines that biosynthesize complex polyketide natural products. Relative to their better studied cis-AT counterparts, the trans-AT PKSs introduce remarkable chemical diversity into their polyketide products. A notable example is the lobatamide A PKS, which incorporates a methylated oxime. Here we demonstrate biochemically that this functionality is installed on-line by an unusual oxygenase-containing bimodule. Furthermore, analysis of the oxygenase crystal structure coupled with site-directed mutagenesis allows us to propose a model for catalysis, as well as identifying key protein-protein interactions that support this chemistry. Overall, our work adds oxime-forming machinery to the biomolecular toolbox available for trans-AT PKS engineering, opening the way to introducing such masked aldehyde functionalities into diverse polyketides.

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