8KGQ image
Entry Detail
PDB ID:
8KGQ
EMDB ID:
Title:
Structure of African swine fever virus topoisomerase II in complex with dsDNA
Biological Source:
PDB Version:
Deposition Date:
2023-08-19
Release Date:
2024-04-03
Method Details:
Experimental Method:
Resolution:
5.60 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:DNA topoisomerase 2
Chain IDs:C (auth: A), D (auth: B)
Chain Length:1211
Number of Molecules:2
Biological Source:African swine fever virus
Polymer Type:polydeoxyribonucleotide
Description:DNA (38-MER)
Chain IDs:A (auth: C)
Chain Length:52
Number of Molecules:1
Biological Source:DNA molecule
Polymer Type:polydeoxyribonucleotide
Description:DNA (38-MER)
Chain IDs:B (auth: D)
Chain Length:52
Number of Molecules:1
Biological Source:DNA molecule
Ligand Molecules
Primary Citation
Structural insights into the DNA topoisomerase II of the African swine fever virus.
Nat Commun 15 4607 4607 (2024)
PMID: 38816407 DOI: 10.1038/s41467-024-49047-w

Abstact

Type II topoisomerases are ubiquitous enzymes that play a pivotal role in modulating the topological configuration of double-stranded DNA. These topoisomerases are required for DNA metabolism and have been extensively studied in both prokaryotic and eukaryotic organisms. However, our understanding of virus-encoded type II topoisomerases remains limited. One intriguing example is the African swine fever virus, which stands as the sole mammalian-infecting virus encoding a type II topoisomerase. In this work, we use several approaches including cryo-EM, X-ray crystallography, and biochemical assays to investigate the structure and function of the African swine fever virus type II topoisomerase, pP1192R. We determine the structures of pP1192R in different conformational states and confirm its enzymatic activity in vitro. Collectively, our results illustrate the basic mechanisms of viral type II topoisomerases, increasing our understanding of these enzymes and presenting a potential avenue for intervention strategies to mitigate the impact of the African swine fever virus.

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Protein

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Disease

Primary Citation of related structures