8KG5 image
Deposition Date 2023-08-17
Release Date 2024-06-19
Last Version Date 2025-07-16
Entry Detail
PDB ID:
8KG5
Title:
Prefusion RSV F Bound to Lonafarnib and D25 Fab
Biological Source:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.17 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Fusion glycoprotein F0,Fibritin
Gene (Uniprot):F, wac
Chain IDs:A, B, C
Chain Length:585
Number of Molecules:3
Biological Source:Human respiratory syncytial virus A (strain A2), Enterobacteria phage T4
Polymer Type:polypeptide(L)
Molecule:D25 heavy chain
Chain IDs:D
Chain Length:231
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:D25 light chain
Chain IDs:E
Chain Length:214
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Farnesyltransferase inhibitor lonafarnib suppresses respiratory syncytial virus infection by blocking conformational change of fusion glycoprotein.
Signal Transduct Target Ther 9 144 144 (2024)
PMID: 38853183 DOI: 10.1038/s41392-024-01858-5

Abstact

Respiratory syncytial virus (RSV) is the major cause of bronchiolitis and pneumonia in young children and the elderly. There are currently no approved RSV-specific therapeutic small molecules available. Using high-throughput antiviral screening, we identified an oral drug, the prenylation inhibitor lonafarnib, which showed potent inhibition of the RSV fusion process. Lonafarnib exhibited antiviral activity against both the RSV A and B genotypes and showed low cytotoxicity in HEp-2 and human primary bronchial epithelial cells (HBEC). Time-of-addition and pseudovirus assays demonstrated that lonafarnib inhibits RSV entry, but has farnesyltransferase-independent antiviral efficacy. Cryo-electron microscopy revealed that lonafarnib binds to a triple-symmetric pocket within the central cavity of the RSV F metastable pre-fusion conformation. Mutants at the RSV F sites interacting with lonafarnib showed resistance to lonafarnib but remained fully sensitive to the neutralizing monoclonal antibody palivizumab. Furthermore, lonafarnib dose-dependently reduced the replication of RSV in BALB/c mice. Collectively, lonafarnib could be a potential fusion inhibitor for RSV infection.

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Primary Citation of related structures