8KA1 image
Entry Detail
PDB ID:
8KA1
Keywords:
Title:
Crystal structure of Vibrio vulnificus RID-dependent transforming NADase domain (RDTND)/calmodulin-binding domain of Rho inactivation domain (RID-CBD) complexed with Ca2+-free calmodulin
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2023-08-02
Release Date:
2024-07-10
Method Details:
Experimental Method:
Resolution:
2.82 Å
R-Value Free:
0.34
R-Value Work:
0.27
R-Value Observed:
0.27
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:RDTND-RID CBD
Chain IDs:A, C, E, G
Chain Length:416
Number of Molecules:4
Biological Source:Vibrio vulnificus
Polymer Type:polypeptide(L)
Description:Calmodulin-2
Mutations:E124Q
Chain IDs:B, D, F, H
Chain Length:151
Number of Molecules:4
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A MET modified residue
Ligand Molecules
Primary Citation
Dissemination of pathogenic bacteria is reinforced by a MARTX toxin effector duet.
Nat Commun 15 6218 6218 (2024)
PMID: 39043696 DOI: 10.1038/s41467-024-50650-0

Abstact

Multiple bacterial genera take advantage of the multifunctional autoprocessing repeats-in-toxin (MARTX) toxin to invade host cells. Secretion of the MARTX toxin by Vibrio vulnificus, a deadly opportunistic pathogen that causes primary septicemia, the precursor of sepsis, is a major driver of infection; however, the molecular mechanism via which the toxin contributes to septicemia remains unclear. Here, we report the crystal and cryo-electron microscopy (EM) structures of a toxin effector duet comprising the domain of unknown function in the first position (DUF1)/Rho inactivation domain (RID) complexed with human targets. These structures reveal how the duet is used by bacteria as a potent weapon. The data show that DUF1 acts as a RID-dependent transforming NADase domain (RDTND) that disrupts NAD+ homeostasis by hijacking calmodulin. The cryo-EM structure of the RDTND-RID duet complexed with calmodulin and Rac1, together with immunological analyses in vitro and in mice, provide mechanistic insight into how V. vulnificus uses the duet to suppress ROS generation by depleting NAD(P)+ and modifying Rac1 in a mutually-reinforcing manner that ultimately paralyzes first line immune responses, promotes dissemination of invaders, and induces sepsis. These data may allow development of tools or strategies to combat MARTX toxin-related human diseases.

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Primary Citation of related structures