8K9K image
Deposition Date 2023-08-01
Release Date 2024-05-29
Last Version Date 2024-10-23
Entry Detail
PDB ID:
8K9K
Title:
Full agonist-bound mu-type opioid receptor-G protein complex
Biological Source:
Source Organism:
Escherichia coli (Taxon ID: 562)
Homo sapiens (Taxon ID: 9606)
Macaca mulatta (Taxon ID: 9544)
synthetic construct (Taxon ID: 32630)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.98 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:G protein subunit alpha i3
Gene (Uniprot):GNAI3
Chain IDs:C (auth: A)
Chain Length:354
Number of Molecules:1
Biological Source:Macaca mulatta
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Guanine nucleotide binding protein, beta polypeptide 1
Chain IDs:D (auth: B)
Chain Length:348
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2
Gene (Uniprot):GNG2
Chain IDs:E (auth: G)
Chain Length:71
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:scFv16
Chain IDs:F (auth: H)
Chain Length:257
Number of Molecules:1
Biological Source:synthetic construct
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Soluble cytochrome b562,Mu-type opioid receptor
Gene (Uniprot):cybC, OPRM1
Mutagens:M7W,H102I,R106L
Chain IDs:A (auth: R)
Chain Length:453
Number of Molecules:1
Biological Source:Escherichia coli, Homo sapiens
Polymer Type:polypeptide(L)
Molecule:DAMGO
Chain IDs:B (auth: S)
Chain Length:5
Number of Molecules:1
Biological Source:synthetic construct
Ligand Molecules
Peptide-like Molecules
PRD_002308
Primary Citation
Structural and dynamic insights into the activation of the mu-opioid receptor by an allosteric modulator.
Nat Commun 15 3544 3544 (2024)
PMID: 38740791 DOI: 10.1038/s41467-024-47792-6

Abstact

G-protein-coupled receptors (GPCRs) play pivotal roles in various physiological processes. These receptors are activated to different extents by diverse orthosteric ligands and allosteric modulators. However, the mechanisms underlying these variations in signaling activity by allosteric modulators remain largely elusive. Here, we determine the three-dimensional structure of the μ-opioid receptor (MOR), a class A GPCR, in complex with the Gi protein and an allosteric modulator, BMS-986122, using cryogenic electron microscopy. Our results reveal that BMS-986122 binding induces changes in the map densities corresponding to R1673.50 and Y2545.58, key residues in the structural motifs conserved among class A GPCRs. Nuclear magnetic resonance analyses of MOR in the absence of the Gi protein reveal that BMS-986122 binding enhances the formation of the interaction between R1673.50 and Y2545.58, thus stabilizing the fully-activated conformation, where the intracellular half of TM6 is outward-shifted to allow for interaction with the Gi protein. These findings illuminate that allosteric modulators like BMS-986122 can potentiate receptor activation through alterations in the conformational dynamics in the core region of GPCRs. Together, our results demonstrate the regulatory mechanisms of GPCRs, providing insights into the rational development of therapeutics targeting GPCRs.

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Primary Citation of related structures