8K6V image
Deposition Date 2023-07-25
Release Date 2025-01-29
Last Version Date 2025-08-13
Entry Detail
PDB ID:
8K6V
Keywords:
Title:
LnaB-Actin-PRUb ternary complex
Biological Source:
Source Organism:
Legionella (Taxon ID: 445)
Homo sapiens (Taxon ID: 9606)
Oryctolagus cuniculus (Taxon ID: 9986)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.60 Å
R-Value Free:
0.30
R-Value Work:
0.25
R-Value Observed:
0.25
Space Group:
P 21 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Actin gamma 1
Gene (Uniprot):ACTG1
Chain IDs:A
Chain Length:375
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:LnaB
Chain IDs:B
Chain Length:352
Number of Molecules:1
Biological Source:Legionella
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ubiquitin
Chain IDs:C
Chain Length:76
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Structure and mechanism of an actin-dependent bacterial phosphoryl AMPylase.
Nat.Chem.Biol. ? ? ? (2025)
PMID: 40588486 DOI: 10.1038/s41589-025-01945-w

Abstact

The two effectors LnaB and MavL of Legionella pneumophila coordinate the conversion of phosphoribosyl ubiquitin (PR-Ub) released by reversal of ubiquitination induced by members of the SidE effector family into functional Ub. LnaB acts as an actin-dependent phosphoryl AMPylase that converts PR-Ub into ADP-ribosylated (ADPR)-Ub. Catalysis by LnaB requires the conserved SHE motif present in a large family of bacterial toxins. Here we describe a series of structures of LnaB in complex with the cofactor actin and the substrate PR-Ub and ATP. LnaB harbors both adenylyltransferase and ATPase activities, which reveal an adenylylation mechanism involved in a two-step catalytic process. Actin performs a unique activation mechanism that promotes the recruitment of PR-Ub by LnaB to activate LnaB's ATPase activity through interacting with LnaB and PR-Ub. Mechanisms derived from this series of structures covering the process of LnaB action establish an important biochemical basis for protein AMPylation.

Legend

Protein

Chemical

Disease

Primary Citation of related structures
Feedback Form
Name
Email
Institute
Feedback