8K6I image
Deposition Date 2023-07-25
Release Date 2025-01-29
Last Version Date 2025-08-13
Entry Detail
PDB ID:
8K6I
Keywords:
Title:
LnaB-Actin-PRUb ternary complex
Biological Source:
Source Organism:
Legionella (Taxon ID: 445)
Homo sapiens (Taxon ID: 9606)
Oryctolagus cuniculus (Taxon ID: 9986)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.19 Å
R-Value Free:
0.31
R-Value Work:
0.29
R-Value Observed:
0.29
Space Group:
P 2 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Actin gamma 1
Gene (Uniprot):ACTG1
Chain IDs:A, B
Chain Length:375
Number of Molecules:2
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:Legionella effector LnaB
Chain IDs:C, D
Chain Length:352
Number of Molecules:2
Biological Source:Legionella
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ubiquitin
Gene (Uniprot):UBC
Chain IDs:E, F
Chain Length:78
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Structure and mechanism of an actin-dependent bacterial phosphoryl AMPylase.
Nat.Chem.Biol. ? ? ? (2025)
PMID: 40588486 DOI: 10.1038/s41589-025-01945-w

Abstact

The two effectors LnaB and MavL of Legionella pneumophila coordinate the conversion of phosphoribosyl ubiquitin (PR-Ub) released by reversal of ubiquitination induced by members of the SidE effector family into functional Ub. LnaB acts as an actin-dependent phosphoryl AMPylase that converts PR-Ub into ADP-ribosylated (ADPR)-Ub. Catalysis by LnaB requires the conserved SHE motif present in a large family of bacterial toxins. Here we describe a series of structures of LnaB in complex with the cofactor actin and the substrate PR-Ub and ATP. LnaB harbors both adenylyltransferase and ATPase activities, which reveal an adenylylation mechanism involved in a two-step catalytic process. Actin performs a unique activation mechanism that promotes the recruitment of PR-Ub by LnaB to activate LnaB's ATPase activity through interacting with LnaB and PR-Ub. Mechanisms derived from this series of structures covering the process of LnaB action establish an important biochemical basis for protein AMPylation.

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Primary Citation of related structures