8K4Z image
Entry Detail
PDB ID:
8K4Z
Keywords:
Title:
Crystal structure of human MMP-7 in complex with inhibitor
Biological Source:
PDB Version:
Deposition Date:
2023-07-20
Release Date:
2024-04-17
Method Details:
Experimental Method:
Resolution:
1.70 Å
R-Value Free:
0.23
R-Value Work:
0.20
Space Group:
I 4
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Matrilysin
Mutations:E215Q
Chain IDs:A
Chain Length:175
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Inhibitor
Chain IDs:B
Chain Length:6
Number of Molecules:1
Biological Source:synthetic construct
Primary Citation
Discovery of TP0628103: A Highly Potent and Selective MMP-7 Inhibitor with Reduced OATP-Mediated Clearance Designed by Shifting Isoelectric Points.
J.Med.Chem. 67 1406 1420 (2024)
PMID: 38214909 DOI: 10.1021/acs.jmedchem.3c01967

Abstact

Matrix metalloproteinase-7 (MMP-7) has been shown to play an important role in pathophysiological processes such as cancer and fibrosis. We previously discovered selective MMP-7 inhibitors by molecular hybridization and structure-based drug design. However, the systemic clearance (CLtot) of the biologically active lead compound was very high. Because our studies revealed that hepatic uptake by organic anion transporting polypeptide (OATP) was responsible for the high CLtot, we found a novel approach to reducing their uptake based on isoelectric point (IP) values as an indicator for substrate recognition by OATP1B1/1B3. Our "IP shift strategy" to adjust the IP values culminated in the discovery of TP0628103 (18), which is characterized by reduced in vitro OATP-mediated hepatic uptake and in vivo CLtot. Our in vitro-in vivo extrapolation of OATP-mediated clearance and the "IP shift strategy" provide crucial insights for a new medicinal chemistry approach to reducing the systemic clearance of OATP1B1/1B3 substrates.

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