8K4S image
Deposition Date 2023-07-20
Release Date 2024-11-06
Last Version Date 2024-12-25
Entry Detail
PDB ID:
8K4S
Title:
CryoEM structure of Gq coupled MRGPRX4 with agonist DCA-3P
Biological Source:
Source Organism(s):
Escherichia coli (Taxon ID: 562)
Homo sapiens (Taxon ID: 9606)
Aequorea victoria (Taxon ID: 6100)
Mus musculus (Taxon ID: 10090)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.90 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Gs-mini-Gq chimera
Chain IDs:B (auth: A)
Chain Length:246
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
Gene (Uniprot):GNB1
Chain IDs:C (auth: B)
Chain Length:340
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2
Gene (Uniprot):GNG2
Chain IDs:D (auth: C)
Chain Length:80
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:scFv16
Chain IDs:E (auth: D)
Chain Length:254
Number of Molecules:1
Biological Source:Mus musculus
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Soluble cytochrome b562,Mas-related G-protein coupled receptor member X4,Green fluorescent protein
Gene (Uniprot):cybC, GFP, MRGPRX4
Chain IDs:A (auth: E)
Chain Length:710
Number of Molecules:1
Biological Source:Escherichia coli, Homo sapiens, Aequorea victoria
Ligand Molecules
Primary Citation
Structure-guided discovery of bile acid derivatives for treating liver diseases without causing itch.
Cell 187 7164 7182.e18 (2024)
PMID: 39476841 DOI: 10.1016/j.cell.2024.10.001

Abstact

Chronic itch is a debilitating symptom profoundly impacting the quality of life in patients with liver diseases like cholestasis. Activation of the human G-protein coupled receptor, MRGPRX4 (hX4), by bile acids (BAs) is implicated in promoting cholestasis itch. However, the detailed underlying mechanisms remain elusive. Here, we identified 3-sulfated BAs that are elevated in cholestatic patients with itch symptoms. We solved the cryo-EM structure of hX4-Gq in a complex with 3-phosphated deoxycholic acid (DCA-3P), a mimic of the endogenous 3-sulfated deoxycholic acid (DCA-3S). This structure revealed an unprecedented ligand-binding pocket in MRGPR family proteins, highlighting the crucial role of the 3-hydroxyl (3-OH) group on BAs in activating hX4. Guided by this structural information, we designed and developed compound 7 (C7), a BA derivative lacking the 3-OH. Notably, C7 effectively alleviates hepatic injury and fibrosis in liver disease models while significantly mitigating the itch side effects.

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Protein

Chemical

Disease

Primary Citation of related structures
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