8K3G image
Entry Detail
PDB ID:
8K3G
Keywords:
Title:
Crystal structure of non-specific phospholipase C RePLC (Rasamsonia emersonii)
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2023-07-15
Release Date:
2024-07-10
Method Details:
Experimental Method:
Resolution:
2.50 Å
R-Value Free:
0.21
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Phospholipase C
Chain IDs:A, B
Chain Length:467
Number of Molecules:2
Biological Source:Rasamsonia emersonii CBS 393.64
Ligand Molecules
Primary Citation
Crystal Structure of Fungal Nonspecific Phospholipase C Unveils a Distinct Catalytic Mechanism.
J.Agric.Food Chem. 71 16352 16361 (2023)
PMID: 37800479 DOI: 10.1021/acs.jafc.3c05155

Abstact

Nonspecific phospholipase C (NPC) plays a pivotal role in hydrolyzing phospholipids, releasing diacylglycerol─an essential second messenger. Extensive research has elucidated the structure and function of bacterial and plant NPCs, but our understanding of their fungal counterparts remains limited. Here, we present the first crystal structure of a fungal NPC derived from Rasamsonia emersonii (RePLC), unraveling its distinguishable features divergent from other known phospholipase C. Remarkably, the structure of RePLC contains solely the phosphoesterase domain without the crucial C-terminal domain (CTD) found in plant NPCs, although CTD is important for their activity. Through a comparative analysis of structural features among NPCs from diverse species combined with structure-based mutation analyses and bioinformatics methods, we propose a potential molecular mechanism that may universally underlie the catalysis of phospholipid hydrolysis in fungal NPCs. Furthermore, our study sheds light on the captivating evolutionary trajectory of enzymes across diverse species.

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