8K3C image
Entry Detail
PDB ID:
8K3C
EMDB ID:
Title:
Nipah virus Attachment glycoprotein with 41-6 antibody fragment
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2023-07-15
Release Date:
2024-05-01
Method Details:
Experimental Method:
Resolution:
2.88 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Glycoprotein G
Chain IDs:C (auth: A), D (auth: B)
Chain Length:471
Number of Molecules:2
Biological Source:Henipavirus nipahense
Polymer Type:polypeptide(L)
Description:Heavy chain of 41-6 Fab fragments
Chain IDs:B (auth: C)
Chain Length:238
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Light chain of 41-6 Fab fragment
Chain IDs:A (auth: D)
Chain Length:216
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Potent human neutralizing antibodies against Nipah virus derived from two ancestral antibody heavy chains.
Nat Commun 15 2987 2987 (2024)
PMID: 38582870 DOI: 10.1038/s41467-024-47213-8

Abstact

Nipah virus (NiV) is a World Health Organization priority pathogen and there are currently no approved drugs for clinical immunotherapy. Through the use of a naïve human phage-displayed Fab library, two neutralizing antibodies (NiV41 and NiV42) targeting the NiV receptor binding protein (RBP) were identified. Following affinity maturation, antibodies derived from NiV41 display cross-reactivity against both NiV and Hendra virus (HeV), whereas the antibody based on NiV42 is only specific to NiV. Results of immunogenetic analysis reveal a correlation between the maturation of antibodies and their antiviral activity. In vivo testing of NiV41 and its mature form (41-6) show protective efficacy against a lethal NiV challenge in hamsters. Furthermore, a 2.88 Å Cryo-EM structure of the tetrameric RBP and antibody complex demonstrates that 41-6 blocks the receptor binding interface. These findings can be beneficial for the development of antiviral drugs and the design of vaccines with broad spectrum against henipaviruses.

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Primary Citation of related structures