ISDA: 8K28

Deposition Date 2023-07-12

Release Date 2024-07-17

Last Version Date 2025-07-23

Entry Detail

PDB ID:

8K28

Keywords:

RNA BINDING PROTEIN/DNA/RNA

Title:

ICP1 Csy-dsDNA complex (form 1)

Biological Source:

Source Organism:

Vibrio phage ICP1_2004_A (Taxon ID: 979527)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.54 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Csy1
Gene (Uniprot):TUST1-10_00450
Chain IDs:A
Chain Length:179
Number of Molecules:1
Biological Source:Vibrio phage ICP1_2004_A

UniProt ID:F1D5V8

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Csy2
Gene (Uniprot):TUST1-10_00445
Chain IDs:B
Chain Length:248
Number of Molecules:1
Biological Source:Vibrio phage ICP1_2004_A

UniProt ID:F1D5V7 Pfam ID:PF09614

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Csy3
Gene (Uniprot):TUST1-10_00440
Chain IDs:C, D, E, F, G, L (auth: H)
Chain Length:306
Number of Molecules:6
Biological Source:Vibrio phage ICP1_2004_A

UniProt ID:F1D5V6 Pfam ID:PF09615

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Csy4
Gene (Uniprot):TUST1-10_00435
Chain IDs:H (auth: I)
Chain Length:168
Number of Molecules:1
Biological Source:Vibrio phage ICP1_2004_A

UniProt ID:F1D5V5 Pfam ID:PF09618

Polymer Type:polyribonucleotide
Molecule:RNA (59-MER)
Chain IDs:K (auth: P)
Chain Length:59
Number of Molecules:1
Biological Source:Vibrio phage ICP1_2004_A

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (33-MER)
Chain IDs:I (auth: Q)
Chain Length:33
Number of Molecules:1
Biological Source:Vibrio phage ICP1_2004_A

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (27-MER)
Chain IDs:J (auth: R)
Chain Length:27
Number of Molecules:1
Biological Source:Vibrio phage ICP1_2004_A

Ligand Molecules

Primary Citation

Structure of csy complex with long DNA State1

Zhang, L.X, Feng, Y.Show

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