ISDA: 8K23

Deposition Date 2023-07-12

Release Date 2024-07-17

Last Version Date 2025-07-23

Entry Detail

PDB ID:

8K23

Keywords:

RNA BINDING PROTEIN/DNA/RNA

Title:

ICP1 Csy-dsDNA-Cas1-Cas2/3 complex (fully assembled form) composited structure with C1 symmetry

Biological Source:

Source Organism:

Vibrio phage ICP1_2004_A (Taxon ID: 979527)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.75 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:HD Cas3-type domain-containing protein
Gene (Uniprot):TUST1-10_00455
Chain IDs:O (auth: A), R (auth: a)
Chain Length:930
Number of Molecules:2
Biological Source:Vibrio phage ICP1_2004_A

UniProt ID:F1D5V9 Pfam ID:PF22590

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Csy1
Gene (Uniprot):TUST1-10_00450
Chain IDs:A (auth: B), S (auth: b)
Chain Length:177
Number of Molecules:2
Biological Source:Vibrio phage ICP1_2004_A

UniProt ID:F1D5V8

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Csy2
Gene (Uniprot):TUST1-10_00445
Chain IDs:B (auth: C), T (auth: c)
Chain Length:248
Number of Molecules:2
Biological Source:Vibrio phage ICP1_2004_A

UniProt ID:F1D5V7 Pfam ID:PF09614

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Cas1
Gene (Uniprot):TUST1-10_00460
Chain IDs:C (auth: D), D (auth: E), U (auth: d), V (auth: e)
Chain Length:302
Number of Molecules:4
Biological Source:Vibrio phage ICP1_2004_A

UniProt ID:F1D5W0 Pfam ID:PF01867

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Csy3
Gene (Uniprot):TUST1-10_00440
Chain IDs:E (auth: G), G (auth: I), H (auth: J), I (auth: K), J (auth: L), K (auth: M), W (auth: g), Y (auth: i), Z (auth: j), AA (auth: k), BA (auth: l), CA (auth: m)
Chain Length:306
Number of Molecules:12
Biological Source:Vibrio phage ICP1_2004_A

UniProt ID:F1D5V6 Pfam ID:PF09615

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Csy4
Gene (Uniprot):TUST1-10_00435
Chain IDs:F (auth: H), X (auth: h)
Chain Length:168
Number of Molecules:2
Biological Source:Vibrio phage ICP1_2004_A

UniProt ID:F1D5V5 Pfam ID:PF09618

Polymer Type:polyribonucleotide
Molecule:RNA (60-MER)
Chain IDs:L (auth: P), DA (auth: p)
Chain Length:60
Number of Molecules:2
Biological Source:Vibrio phage ICP1_2004_A

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (43-MER)
Chain IDs:M (auth: Q), P (auth: U), EA (auth: q)
Chain Length:43
Number of Molecules:3
Biological Source:Vibrio phage ICP1_2004_A

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (31-MER)
Chain IDs:N (auth: R), FA (auth: r)
Chain Length:31
Number of Molecules:2
Biological Source:Vibrio phage ICP1_2004_A

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*AP*TP*CP*TP*TP*CP*CP*CP*TP*AP*TP*TP*TP*AP*AP*AP*TP*TP*GP*CP*T)-3')
Chain IDs:Q (auth: V)
Chain Length:21
Number of Molecules:1
Biological Source:Vibrio phage ICP1_2004_A

Ligand Molecules

Primary Citation

ICP1 Csy-dsDNA-Cas1-Cas2/3 complex (fully assembled form) composited structure with C1 symmetry

Zhang, L.X, Feng, Y.Show

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