ISDA: 8K21

Deposition Date 2023-07-12

Release Date 2024-07-17

Last Version Date 2025-07-16

Entry Detail

PDB ID:

8K21

Keywords:

ANTIBIOTIC/RNA BINDING PROTEIN/DNA

Title:

Cas1-Cas2-dsDNA subregion in ICP1 Csy-DNA-Cas1-2/3 complex

Biological Source:

Source Organism:

Vibrio phage ICP1_2004_A (Taxon ID: 979527)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.80 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:HD Cas3-type domain-containing protein
Gene (Uniprot):TUST1-10_00455
Chain IDs:C (auth: A), F (auth: a)
Chain Length:75
Number of Molecules:2
Biological Source:Vibrio phage ICP1_2004_A

UniProt ID:F1D5V9

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Cas1
Gene (Uniprot):TUST1-10_00460
Chain IDs:D, E, G (auth: d), H (auth: e)
Chain Length:295
Number of Molecules:4
Biological Source:Vibrio phage ICP1_2004_A

UniProt ID:F1D5W0 Pfam ID:PF01867

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*AP*GP*CP*AP*AP*TP*TP*TP*AP*AP*AP*TP*AP*GP*GP*GP*AP*AP*GP*AP*T)-3')
Chain IDs:A (auth: U)
Chain Length:21
Number of Molecules:1
Biological Source:Vibrio phage ICP1_2004_A

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*AP*TP*CP*TP*TP*CP*CP*CP*TP*AP*TP*TP*TP*AP*AP*AP*TP*TP*GP*CP*T)-3')
Chain IDs:B (auth: V)
Chain Length:21
Number of Molecules:1
Biological Source:Vibrio phage ICP1_2004_A

Ligand Molecules

Primary Citation

Structure of csy complex with short DNA

Zhang, L.X, Feng, Y.Show

To Be Published ? ? ? (?)

Primary Citation of related structures

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