8K0F image
Entry Detail
PDB ID:
8K0F
EMDB ID:
Title:
Human collagen prolyl processing enzyme complex, P3H1/CRTAP/PPIB heterotrimer, in its apo state
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2023-07-08
Release Date:
2024-09-18
Method Details:
Experimental Method:
Resolution:
3.37 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Prolyl 3-hydroxylase 1
Chain IDs:A
Chain Length:736
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Cartilage-associated protein
Chain IDs:B
Chain Length:442
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Peptidyl-prolyl cis-trans isomerase B
Chain IDs:C
Chain Length:256
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
The structural basis for the collagen processing by human P3H1/CRTAP/PPIB ternary complex.
Nat Commun 15 7844 7844 (2024)
PMID: 39245686 DOI: 10.1038/s41467-024-52321-6

Abstact

Collagen posttranslational processing is crucial for its proper assembly and function. Disruption of collagen processing leads to tissue development and structure disorders like osteogenesis imperfecta (OI). OI-related collagen processing machinery includes prolyl 3-hydroxylase 1 (P3H1), peptidyl-prolyl cis-trans isomerase B (PPIB), and cartilage-associated protein (CRTAP), with their structural organization and mechanism unclear. We determine cryo-EM structures of the P3H1/CRTAP/PPIB complex. The active sites of P3H1 and PPIB form a face-to-face bifunctional reaction center, indicating a coupled modification mechanism. The structure of the P3H1/CRTAP/PPIB/collagen peptide complex reveals multiple binding sites, suggesting a substrate interacting zone. Unexpectedly, a dual-ternary complex is observed, and the balance between ternary and dual-ternary states can be altered by mutations in the P3H1/PPIB active site and the addition of PPIB inhibitors. These findings provide insights into the structural basis of collagen processing by P3H1/CRTAP/PPIB and the molecular pathology of collagen-related disorders.

Legend

Protein

Chemical

Disease

Primary Citation of related structures