8K0D image
Deposition Date 2023-07-08
Release Date 2024-05-01
Last Version Date 2024-10-30
Entry Detail
PDB ID:
8K0D
Keywords:
Title:
Cryo-EM structure of conformation 2 of complex of Nipah virus attachment G with 1E5 neutralizing antibody
Biological Source:
Source Organism:
Macaca mulatta (Taxon ID: 9544)
Nipah virus (Taxon ID: 121791)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.94 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Glycoprotein G
Gene (Uniprot):G
Chain IDs:C (auth: A), F (auth: B)
Chain Length:402
Number of Molecules:2
Biological Source:Nipah virus
Polymer Type:polypeptide(L)
Molecule:The heavy chain of 1E5
Chain IDs:A (auth: E), D (auth: C)
Chain Length:242
Number of Molecules:2
Biological Source:Macaca mulatta
Polymer Type:polypeptide(L)
Molecule:The light chain of 1E5
Chain IDs:B (auth: F), E (auth: D)
Chain Length:213
Number of Molecules:2
Biological Source:Macaca mulatta
Ligand Molecules
Primary Citation
A potent Henipavirus cross-neutralizing antibody reveals a dynamic fusion-triggering pattern of the G-tetramer.
Nat Commun 15 4330 4330 (2024)
PMID: 38773072 DOI: 10.1038/s41467-024-48601-w

Abstact

The Hendra and Nipah viruses (HNVs) are highly pathogenic pathogens without approved interventions for human use. In addition, the interaction pattern between the attachment (G) and fusion (F) glycoproteins required for virus entry remains unclear. Here, we isolate a panel of Macaca-derived G-specific antibodies that cross-neutralize HNVs via multiple mechanisms. The most potent antibody, 1E5, confers adequate protection against the Nipah virus challenge in female hamsters. Crystallography demonstrates that 1E5 has a highly similar binding pattern to the receptor. In cryo-electron microscopy studies, the tendency of 1E5 to bind to the upper or lower heads results in two distinct quaternary structures of G. Furthermore, we identify the extended outer loop β1S2-β1S3 of G and two pockets on the apical region of fusion (F) glycoprotein as the essential sites for G-F interactions. This work highlights promising drug candidates against HNVs and contributes deeper insights into the viruses.

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Primary Citation of related structures