8JZG image
Entry Detail
PDB ID:
8JZG
Keywords:
Title:
C. glutamicum S-adenosylmethionine synthase co-crystallized with Adenosine, triphosphate, and SAM
Biological Source:
PDB Version:
Deposition Date:
2023-07-05
Release Date:
2023-10-25
Method Details:
Experimental Method:
Resolution:
2.39 Å
R-Value Free:
0.26
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:S-adenosylmethionine synthase
Chain IDs:A, B, C, D
Chain Length:407
Number of Molecules:4
Biological Source:Corynebacterium glutamicum ATCC 13032
Primary Citation
Structural and Biochemical Studies on Product Inhibition of S-Adenosylmethionine Synthetase from Corynebacterium glutamicum .
J.Agric.Food Chem. 71 15692 15700 (2023)
PMID: 37846083 DOI: 10.1021/acs.jafc.3c05180

Abstact

S-Adenosylmethionine (SAM) acts as a methyl donor in living organisms, and S-adenosylmethionine synthetase (MetK) is an essential enzyme for cells, as it synthesizes SAM from methionine and adenosine triphosphate (ATP). This study determined the crystal structures of the apo form and adenosine/triphosphate complex form of MetK from Corynebacterium glutamicum (CgMetK). Results showed that CgMetK has an allosteric inhibitor binding site for the SAM product in the vicinity of the active site and is inhibited by SAM both competitively and noncompetitively. Through structure-guided protein engineering, the CgMetKE68A variant was developed that exhibited an almost complete release of inhibition by SAM with rather enhanced enzyme activity. The crystal structure of the CgMetKE68A variant revealed that the formation of a new hydrogen bond between Tyr66 and Glu102 by the E68A mutation disrupted the allosteric SAM binding site and also improved the protein thermal stability by strengthening the tetramerization of the enzyme.

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