8JZ8 image
Deposition Date 2023-07-04
Release Date 2024-05-15
Last Version Date 2024-10-30
Entry Detail
PDB ID:
8JZ8
Keywords:
Title:
Subatomic structure of orthorhombic thaumatin at 0.89 Angstroms
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
0.89 Å
R-Value Free:
0.13
R-Value Work:
0.11
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Thaumatin I
Chain IDs:A
Chain Length:207
Number of Molecules:1
Biological Source:Thaumatococcus daniellii
Ligand Molecules
Primary Citation
Subatomic structure of orthorhombic thaumatin at 0.89 angstrom reveals that highly flexible conformations are crucial for thaumatin sweetness.
Biochem.Biophys.Res.Commun. 703 149601 149601 (2024)
PMID: 38364680 DOI: 10.1016/j.bbrc.2024.149601

Abstact

Thaumatin is a sweet-tasting protein that elicits a sweet taste at a threshold of approximately 50 nM. Structure-sweetness relationships in thaumatin suggest that the basicity of two amino acids residues, Arg82 and Lys67, are particularly responsible for sweetness. Using tetragonal crystals, our structural analysis suggested that flexible sidechain conformations of these two residues play an important role in sweetness. However, in tetragonal crystals, Arg82 is adjacent to symmetry-related residues, and its flexibility is relatively restrained by the crystal packing. To reduce and diminish these symmetry-related effects, orthorhombic crystals were prepared, and their structures were successfully determined at a resolution of 0.89 Å. Within the orthorhombic lattice, two alternative conformations were more clearly visible at Lys67 than in a tetragonal system. Interestingly, for the first time, three alternative conformations at Arg82 were only found in an orthorhombic system. These results suggest the importance of flexible conformations in sweetness determinants. Such subtle structural variations might serve to adjust the complementarity of the electrostatic potentials of sweet receptors, thereby eliciting the potent sweet taste of thaumatin.

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Primary Citation of related structures