8JYW image
Entry Detail
PDB ID:
8JYW
EMDB ID:
Keywords:
Title:
Cryo-EM structure of the gasdermin pore from Trichoplax adhaerens
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2023-07-04
Release Date:
2024-05-01
Method Details:
Experimental Method:
Resolution:
3.30 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Gasdermin pore forming domain-containing protein
Chain IDs:A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U (auth: V), V (auth: W), W (auth: X), X (auth: Y), Y (auth: Z), Z (auth: AA), AA (auth: BA), BA (auth: CA), CA (auth: DA), DA (auth: EA), EA (auth: FA), FA (auth: GA), GA (auth: HA), HA (auth: IA), IA (auth: JA), JA (auth: KA), KA (auth: LA), LA (auth: MA), MA (auth: NA), NA (auth: OA), OA (auth: PA), PA (auth: QA), QA (auth: RA), RA (auth: SA), SA (auth: TA), TA (auth: UA), UA (auth: VA), VA (auth: WA), WA (auth: XA), XA (auth: YA), YA (auth: ZA), ZA (auth: AB), AB (auth: BB), BB (auth: CB), CB (auth: DB), DB (auth: EB), EB (auth: FB), FB (auth: GB), GB (auth: HB), HB (auth: IB), IB (auth: JB), JB (auth: KB), KB (auth: LB), LB (auth: MB), MB (auth: NB), NB (auth: OB), OB (auth: PB), PB (auth: QB), QB (auth: RB), RB (auth: SB), SB (auth: TB), TB (auth: UB), UB (auth: VB), VB (auth: WB), WB (auth: XB), XB (auth: YB), YB (auth: ZB), ZB (auth: AC), AC (auth: BC), BC (auth: CC), CC (auth: DC), DC (auth: EC), EC (auth: FC), FC (auth: GC), GC (auth: HC), HC (auth: IC), IC (auth: JC), JC (auth: KC)
Chain Length:254
Number of Molecules:88
Biological Source:Trichoplax adhaerens
Ligand Molecules
Primary Citation
Cleavage-independent activation of ancient eukaryotic gasdermins and structural mechanisms.
Science 384 adm9190 adm9190 (2024)
PMID: 38662913 DOI: 10.1126/science.adm9190

Abstact

Gasdermins (GSDMs) are pore-forming proteins that execute pyroptosis for immune defense. GSDMs are two-domain proteins activated by proteolytic removal of the inhibitory domain. In this work, we report two types of cleavage-independent GSDM activation. First, TrichoGSDM, a pore-forming domain-only protein from the basal metazoan Trichoplax adhaerens, is a disulfides-linked autoinhibited dimer activated by reduction of the disulfides. The cryo-electron microscopy (cryo-EM) structure illustrates the assembly mechanism for the 44-mer TrichoGSDM pore. Second, RCD-1-1 and RCD-1-2, encoded by the polymorphic regulator of cell death-1 (rcd-1) gene in filamentous fungus Neurospora crassa, are also pore-forming domain-only GSDMs. RCD-1-1 and RCD-1-2, when encountering each other, form pores and cause pyroptosis, underlying allorecognition in Neurospora. The cryo-EM structure reveals a pore of 11 RCD-1-1/RCD-1-2 heterodimers and a heterodimerization-triggered pore assembly mechanism. This study shows mechanistic diversities in GSDM activation and indicates versatile functions of GSDMs.

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