8JYD image
Deposition Date 2023-07-03
Release Date 2024-07-10
Last Version Date 2025-01-29
Entry Detail
PDB ID:
8JYD
Keywords:
Title:
A genetically encoded sensor based on a bacterial DNA ligase
Biological Source:
Method Details:
Experimental Method:
Resolution:
3.00 Å
R-Value Free:
0.25
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 31 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:DNA ligase
Gene (Uniprot):ligA
Chain IDs:A
Chain Length:312
Number of Molecules:1
Biological Source:Enterococcus faecalis (strain ATCC 700802 / V583)
Ligand Molecules
Primary Citation
Quantitative dynamics of intracellular NMN by genetically encoded biosensor.
Biosens.Bioelectron. 267 116842 116842 (2025)
PMID: 39418868 DOI: 10.1016/j.bios.2024.116842

Abstact

Nicotinamide mononucleotide (NMN) is the direct precursor and a major booster of NAD+ with increasing applications in NAD+- and aging-related pathologies. However, measuring live cell NMN dynamics was not possible, leaving key questions in NMN uptake and intracellular regulation unanswered. Here we developed genetically encoded bioluminescent and fluorescent sensors to quantify subcellular NMN in live cells by engineering specific NMN-responsive protein scaffolds fused to luciferase and fluorescent proteins. The sensor dissected the multimechanistic uptake of exogenous NMN and nicotinamide riboside (NR) in live cells and further measured the NMN levels across different subcellular compartments, as well as the perturbed NMN/NAD+ ratios by external supplements. Moreover, we measured the NMN regulation by NAD(H) hydrolase Nudts and peroxisomal carrier Pxmp2 and identified Slc25a45 as a potential mitochondrial NMN regulator for its unique fingerprint on the local NMN/NAD+ ratio. Collectively, the genetically encoded sensors provide a useful tool for visualizing NMN metabolism.

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Primary Citation of related structures