8JXR image
Entry Detail
PDB ID:
8JXR
EMDB ID:
Title:
Structure of nanobody-bound DRD1_LSD complex
Biological Source:
PDB Version:
Deposition Date:
2023-07-01
Release Date:
2024-09-04
Method Details:
Experimental Method:
Resolution:
3.57 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:D(1A) dopamine receptor
Mutations:L112W,S325A
Chain IDs:A
Chain Length:352
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:NBA3
Chain IDs:B
Chain Length:125
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Maltose/maltodextrin-binding periplasmic protein,Immunoglobulin G-binding protein A,Immunoglobulin G-binding protein G
Mutations:E360Q,K363A,D364F,T367I,R368L
Chain IDs:C
Chain Length:559
Number of Molecules:1
Biological Source:Escherichia coli O157:H7, Staphylococcus aureus, Staphylococcus aureus subsp. aureus Mu50, Streptococcus sp. 'group G'
Polymer Type:polypeptide(L)
Description:Fab 8D3 heavy chain
Chain IDs:D (auth: H)
Chain Length:253
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Fab 8D3 light chain
Chain IDs:E (auth: L)
Chain Length:239
Number of Molecules:1
Biological Source:Mus musculus
Ligand Molecules
Peptide-like Molecules
PRD_900001
Primary Citation
Structural basis of psychedelic LSD recognition at dopamine D 1 receptor.
Neuron 112 3295 ? (2024)
PMID: 39094559 DOI: 10.1016/j.neuron.2024.07.003

Abstact

Understanding the kinetics of LSD in receptors and subsequent induced signaling is crucial for comprehending both the psychoactive and therapeutic effects of LSD. Despite extensive research on LSD's interactions with serotonin 2A and 2B receptors, its behavior on other targets, including dopamine receptors, has remained elusive. Here, we present cryo-EM structures of LSD/PF6142-bound dopamine D1 receptor (DRD1)-legobody complexes, accompanied by a β-arrestin-mimicking nanobody, NBA3, shedding light on the determinants of G protein coupling versus β-arrestin coupling. Structural analysis unveils a distinctive binding mode of LSD in DRD1, particularly with the ergoline moiety oriented toward TM4. Kinetic investigations uncover an exceptionally rapid dissociation rate of LSD in DRD1, attributed to the flexibility of extracellular loop 2 (ECL2). Moreover, G protein can stabilize ECL2 conformation, leading to a significant slowdown in ligand's dissociation rate. These findings establish a solid foundation for further exploration of G protein-coupled receptor (GPCR) dynamics and their relevance to signal transduction.

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