8JUF image
Entry Detail
PDB ID:
8JUF
Title:
Crystal structure of human MMP-7 in complex with inhibitor
Biological Source:
PDB Version:
Deposition Date:
2023-06-26
Release Date:
2023-11-01
Method Details:
Experimental Method:
Resolution:
1.39 Å
R-Value Free:
0.22
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
I 4
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Matrilysin
Mutations:E215Q
Chain IDs:A
Chain Length:175
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Peptide Inhibitor
Chain IDs:B
Chain Length:7
Number of Molecules:1
Biological Source:synthetic construct
Primary Citation
Structure-Based Optimization and Biological Evaluation of Potent and Selective MMP-7 Inhibitors for Kidney Fibrosis.
J.Med.Chem. 66 14653 14668 (2023)
PMID: 37861435 DOI: 10.1021/acs.jmedchem.3c01166

Abstact

Matrix metalloproteinase-7 (MMP-7) has been shown to play important roles in pathophysiological processes involved in the development/progression of diseases such as cancer and fibrosis. We discovered selective MMP-7 inhibitors composed of arylsulfonamide, carboxylate, and short peptides by a molecular hybridization approach. These compounds interacted with MMP-7 via multiple hydrogen bonds in the cocrystal structures. To obtain compounds for in vivo evaluation, we attempted structural optimization, particularly targeting Tyr167 at the S3 subsite through structure-based drug design, and identified compound 15 as showing improved MMP-7 potency and MMP subtype selectivity. A novel π-π stacking interaction with Tyr167 was achieved when 4-pyridylalanine was introduced as the P3 residue. Compound 15 suppressed the progression of kidney fibrosis in a dose-dependent manner in a mouse model of unilateral ureteral obstruction. Thus, we demonstrated, for the first time, that potent and selective MMP-7 inhibitors could prevent the progression of kidney fibrosis.

Legend

Protein

Chemical

Disease

Primary Citation of related structures