8JUE image
Entry Detail
PDB ID:
8JUE
Title:
Crystal structure of glutaminase C in complex with compound 11
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2023-06-26
Release Date:
2023-10-11
Method Details:
Experimental Method:
Resolution:
2.39 Å
R-Value Free:
0.24
R-Value Work:
0.18
R-Value Observed:
0.19
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Glutaminase kidney isoform, mitochondrial
Chain IDs:A, B, C, D
Chain Length:533
Number of Molecules:4
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Targeting the Subpocket Enables the Discovery of Thiadiazole-Pyridazine Derivatives as Glutaminase C Inhibitors.
Acs Med.Chem.Lett. 14 1455 1466 (2023)
PMID: 37849538 DOI: 10.1021/acsmedchemlett.3c00375

Abstact

As glutaminase C (GAC) has become an attractive target for cancer treatment by regulating glutaminolysis, thus, interest in GAC inhibitors has risen in recent years. Herein, a potential binding subpocket comprising basic residues was identified, and through extensive structure-activity relationship studies, promising inhibitors 11 and 39 were identified with robust GAC inhibitory activity and A549 cell antiproliferative activity. X-ray crystallography of the 11-GAC and 27-GAC complexes revealed a novel binding mode against GAC. The potency of 11 and 27 against GACK320A further highlighted the importance of the binding. Notably, compounds 11 and 39 regulated the cellular metabolite, thereby increasing reactive oxygen species by blocking glutamine metabolism. Compound 11 also exhibited excellent antiproliferative activity in the A549 cell xenograft model. We further proved that 11 is a safe GAC allosteric inhibitor. A basic subpocket is proposed that might provide new strategies for the development of novel GAC inhibitors in the future.

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Primary Citation of related structures