8JSI image
Deposition Date 2023-06-20
Release Date 2024-06-26
Last Version Date 2025-07-02
Entry Detail
PDB ID:
8JSI
Keywords:
DNA BINDING PROTEIN/DNA
Title:
Cryo-EM structure of a DNA-protein complex
Biological Source:
Source Organism:
Thermococcus thioreducens (Taxon ID: 277988)
Host Organism:
Escherichia coli BL21(DE3)
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
2.90 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
8JSI validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Argonaute family protein
Gene (Uniprot):A3L14_06700, AMR53_05540, SAMN05216170_0611
Chain IDs:A, D (auth: B)
Chain Length:750
Number of Molecules:2
Biological Source:Thermococcus thioreducens
UniProt ID:A0A0Q2M2Z1 Pfam ID:PF22476, PF12212, PF02171
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*GP*GP*AP*GP*GP*TP*AP*GP*TP*AP*GP*GP*TP*TP*GP*T)-3')
Chain IDs:C (auth: G), F (auth: H)
Chain Length:16
Number of Molecules:2
Biological Source:Thermococcus thioreducens
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*AP*CP*AP*AP*CP*CP*TP*AP*CP*TP*AP*CP*CP*TP*CP*C)-3')
Chain IDs:B (auth: T), E (auth: U)
Chain Length:16
Number of Molecules:2
Biological Source:Thermococcus thioreducens
Ligand Molecules
MG
ZN
Primary Citation
Cryo-EM structure of a DNA-protein complex
Li, Z.Show
To Be Published ? ? ? (?)
Primary Citation of related structures
8JSI