8JR9 image
Entry Detail
PDB ID:
8JR9
EMDB ID:
Title:
Small molecule agonist (PCO371) bound to human parathyroid hormone receptor type 1 (PTH1R)
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2023-06-16
Release Date:
2023-08-02
Method Details:
Experimental Method:
Resolution:
2.57 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Guanine nucleotide-binding protein G(s) subunit alpha-1
Chain IDs:A
Chain Length:361
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
Chain IDs:B
Chain Length:352
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2
Chain IDs:C (auth: G)
Chain Length:71
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Nanobody 35
Chain IDs:D (auth: N)
Chain Length:140
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Parathyroid hormone/parathyroid hormone-related peptide receptor
Chain IDs:E (auth: R)
Chain Length:478
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Conserved class B GPCR activation by a biased intracellular agonist.
Nature 621 635 641 (2023)
PMID: 37524305 DOI: 10.1038/s41586-023-06467-w

Abstact

Class B G-protein-coupled receptors (GPCRs), including glucagon-like peptide 1 receptor (GLP1R) and parathyroid hormone 1 receptor (PTH1R), are important drug targets1-5. Injectable peptide drugs targeting these receptors have been developed, but orally available small-molecule drugs remain under development6,7. Here we report the high-resolution structure of human PTH1R in complex with the stimulatory G protein (Gs) and a small-molecule agonist, PCO371, which reveals an unexpected binding mode of PCO371 at the cytoplasmic interface of PTH1R with Gs. The PCO371-binding site is totally different from all binding sites previously reported for small molecules or peptide ligands in GPCRs. The residues that make up the PCO371-binding pocket are conserved in class B GPCRs, and a single alteration in PTH2R and two residue alterations in GLP1R convert these receptors to respond to PCO371. Functional assays reveal that PCO371 is a G-protein-biased agonist that is defective in promoting PTH1R-mediated arrestin signalling. Together, these results uncover a distinct binding site for designing small-molecule agonists for PTH1R and possibly other members of the class B GPCRs and define a receptor conformation that is specific only for G-protein activation but not arrestin signalling. These insights should facilitate the design of distinct types of class B GPCR small-molecule agonist for various therapeutic indications.

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Primary Citation of related structures