8JN4 image
Deposition Date 2023-06-06
Release Date 2024-06-12
Last Version Date 2025-12-24
Entry Detail
PDB ID:
8JN4
Title:
Cryo-EM structure of dengue virus serotype 3 strain 863DK in complex with human antibody DENV-290 Fab at 4 deg C (subparticle LLR-LRR)
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.50 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Envelope protein
Chain IDs:A, C, E
Chain Length:493
Number of Molecules:3
Biological Source:Dengue virus type 3
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Membrane protein
Chain IDs:B, D, F
Chain Length:75
Number of Molecules:3
Biological Source:Dengue virus type 3
Polymer Type:polypeptide(L)
Molecule:Human antibody DENV-290 heavy chain
Chain IDs:G (auth: H)
Chain Length:122
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Human antibody DENV-290 light chain
Chain IDs:H (auth: L)
Chain Length:113
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Ultrapotent human antibodies lock E protein dimers central region of diverse DENV3 morphological variants.
Nat Commun 16 9182 9182 (2025)
PMID: 41102151 DOI: 10.1038/s41467-025-64210-7

Abstact

Dengue virus (DENV) consists of four serotypes (DENV1-4). Current vaccines induce differing levels of immune response against the four serotypes, that might prime recipients to develop severe disease in subsequent infections. Several DENV tetravalent vaccine clinical trials suggested an increased incidence in severe DENV3 cases, suggesting a need to develop DENV3 therapeutics. Human monoclonal antibodies (HMAbs) DENV-290 and DENV-115 are ultrapotent against diverse DENV3 strains with differing particle morphologies. They mainly neutralize by inhibition of virus attachment to cells. CryoEM structures of Fabs complexed with differing DENV3 morphological variants show their Fabs binding across two E protein protomers at the center of the E dimer. This new class of E protein dimer binding antibodies is named EDE-C. The cryoEM structures also show how IgGs engage the DENV particles. Results define the structural and molecular basis for the ultrapotent activity of EDE-C antibodies.

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Chemical

Disease

Primary Citation of related structures
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