8JMT image
Deposition Date 2023-06-05
Release Date 2023-09-06
Last Version Date 2025-07-02
Entry Detail
PDB ID:
8JMT
Title:
Structure of the adhesion GPCR ADGRL3 in the apo state
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Escherichia coli (Taxon ID: 562)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.36 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Adhesion G protein-coupled receptor L3,Soluble cytochrome b562
Gene (Uniprot):cybC
Mutations:T364A/M566W/H654I
Chain IDs:A
Chain Length:758
Number of Molecules:1
Biological Source:Homo sapiens, Escherichia coli
Ligand Molecules
Primary Citation
A method for structure determination of GPCRs in various states.
Nat.Chem.Biol. 20 74 82 (2024)
PMID: 37580554 DOI: 10.1038/s41589-023-01389-0

Abstact

G-protein-coupled receptors (GPCRs) are a class of integral membrane proteins that detect environmental cues and trigger cellular responses. Deciphering the functional states of GPCRs induced by various ligands has been one of the primary goals in the field. Here we developed an effective universal method for GPCR cryo-electron microscopy structure determination without the need to prepare GPCR-signaling protein complexes. Using this method, we successfully solved the structures of the β2-adrenergic receptor (β2AR) bound to antagonistic and agonistic ligands and the adhesion GPCR ADGRL3 in the apo state. For β2AR, an intermediate state stabilized by the partial agonist was captured. For ADGRL3, the structure revealed that inactive ADGRL3 adopts a compact fold and that large unusual conformational changes on both the extracellular and intracellular sides are required for activation of adhesion GPCRs. We anticipate that this method will open a new avenue for understanding GPCR structure‒function relationships and drug development.

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Primary Citation of related structures