8JM1 image
Deposition Date 2023-06-04
Release Date 2024-06-12
Last Version Date 2025-10-08
Entry Detail
PDB ID:
8JM1
Keywords:
LYASE
Title:
Endo-deglycosylated hydroxynitrile lyase isozyme 5 mutant from Prunus communis mutant L331A complexed with 2,2-dimethyl-4H-benzo[d][1,3]dioxine-6-carbaldehyde (Form A)
Biological Source:
Source Organism:
Prunus dulcis (Taxon ID: 3755)
Host Organism:
Komagataella pastoris
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
2.31 Å
R-Value Free:
0.19
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 21 21 21
8JM1 validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:(R)-mandelonitrile lyase
Mutagens:L331A
Chain IDs:A
Chain Length:540
Number of Molecules:1
Biological Source:Prunus dulcis
UniProt ID:Q7XJE8 Pfam ID:PF00732, PF05199
Ligand Molecules
BCN
EDO
FAD
FQ3
NAG
PEG
Primary Citation
Endo-deglycosylated hydroxynitrile lyase isozyme 5 mutant from Prunus communis mutant L331A complexed with 2,2-dimethyl-4H-benzo[d][1,3]dioxine-6-carbaldehyde (Form A)
To Be Published ? ? ? (?)
Primary Citation of related structures
8JM1