8JFZ image
Deposition Date 2023-05-19
Release Date 2023-08-09
Last Version Date 2024-11-13
Entry Detail
PDB ID:
8JFZ
Title:
Cryo-EM structure of Na+,K+-ATPase in the E1.Mg2+ state.
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.50 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Na, K-ATPase alpha subunit
Gene (Uniprot):atn1
Chain IDs:B (auth: C), E (auth: A)
Chain Length:1028
Number of Molecules:2
Biological Source:Squalus acanthias
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Na+,K+-ATPase beta subunit
Gene (Uniprot):atp1b1
Chain IDs:A (auth: D), D (auth: B)
Chain Length:305
Number of Molecules:2
Biological Source:Squalus acanthias
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:FXYD domain-containing ion transport regulator
Gene (Uniprot):fxyd10
Chain IDs:C (auth: E), F (auth: G)
Chain Length:94
Number of Molecules:2
Biological Source:Squalus acanthias
Primary Citation
Crystal structures of Na + ,K + -ATPase reveal the mechanism that converts the K + -bound form to Na + -bound form and opens and closes the cytoplasmic gate.
Febs Lett. 597 1957 1976 (2023)
PMID: 37357620 DOI: 10.1002/1873-3468.14689

Abstact

Na+ ,K+ -ATPase (NKA) plays a pivotal role in establishing electrochemical gradients for Na+ and K+ across the cell membrane by alternating between the E1 (showing high affinity for Na+ and low affinity for K+) and E2 (low affinity to Na+ and high affinity to K+) forms. Presented here are two crystal structures of NKA in E1·Mg2+ and E1·3Na+ states at 2.9 and 2.8 Å resolution, respectively. These two E1 structures fill a gap in our description of the NKA reaction cycle based on the atomic structures. We describe how NKA converts the K+ -bound E2·2K+ form to an E1 (E1·Mg2+) form, which allows high-affinity Na+ binding, eventually closing the cytoplasmic gate (in E1 ~ P·ADP·3Na+) after binding three Na+ , while keeping the extracellular ion pathway sealed. We now understand previously unknown functional roles for several parts of NKA and that NKA uses even the lipid bilayer for gating the ion pathway.

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Primary Citation of related structures
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