8JC1 image
Deposition Date 2023-05-10
Release Date 2024-09-04
Last Version Date 2024-10-16
Entry Detail
PDB ID:
8JC1
Keywords:
Title:
Crystal structure of Pectocin M1 from Pectobacterium carotovorum
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.04 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:pectocin M1
Gene (Uniprot):PC1_2303
Chain IDs:A, B, C, D
Chain Length:268
Number of Molecules:4
Biological Source:Pectobacterium carotovorum
Primary Citation
Crystal structure of pectocin M1 reveals diverse conformations and interactions during its initial step via the ferredoxin uptake system.
Febs Open Bio 14 1731 1745 (2024)
PMID: 39123319 DOI: 10.1002/2211-5463.13874

Abstact

Pectocin M1 (PM1), the bacteriocin from phytopathogenic Pectobacterium carotovorum which causes soft rot disease, has a unique ferredoxin domain that allows it to use FusA of the plant ferredoxin uptake system. To probe the structure-based mechanism of PM1 uptake, we determined the X-ray structure of full-length PM1, containing an N-terminal ferredoxin and C-terminal catalytic domain connected by helical linker, at 2.04 Å resolution. Based on published FusA structure and NMR data for PM1 ferredoxin domain titrated with FusA, we modeled docking of the ferredoxin domain with FusA. Combining the docking models with the X-ray structures of PM1 and FusA enables us to propose the mechanism by which PM1 undergoes dynamic domain rearrangement to translocate across the target cell outer membrane.

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Primary Citation of related structures
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