8J9Y image
Deposition Date 2023-05-05
Release Date 2023-08-16
Last Version Date 2023-11-29
Entry Detail
PDB ID:
8J9Y
Keywords:
Title:
cryo-EM structure of viral topoisomerase in conformation 1
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.16 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA topoisomerase 2
Gene (Uniprot):P1192R CDS
Chain IDs:A (auth: B), B (auth: A)
Chain Length:1192
Number of Molecules:2
Biological Source:African swine fever virus LIS57
Ligand Molecules
Primary Citation
Cryo-EM structures of African swine fever virus topoisomerase.
Mbio 14 e0122823 e0122823 (2023)
PMID: 37610250 DOI: 10.1128/mbio.01228-23

Abstact

African swine fever virus (ASFV) is a highly contagious virus that causes lethal hemorrhagic diseases known as African swine fever (ASF) with a case fatality rate of 100%. There is an urgent need to develop anti-ASFV drugs. We determine the first high-resolution structures of viral topoisomerase ASFV P1192R in both the closed and open C-gate forms. P1192R shows a similar overall architecture with eukaryotic and prokaryotic type II topoisomerases, which have been successful targets of many antimicrobials and anticancer drugs, with the most similarity to yeast topo II. P1192R also exhibits differences in the details of active site configuration, which are important to enzyme activity. These two structures offer useful structural information for antiviral drug design and provide structural evidence to support that eukaryotic type IIA topoisomerase likely originated from horizontal gene transfer from the virus.

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Disease

Primary Citation of related structures