8J8N image
Deposition Date 2023-05-02
Release Date 2024-05-15
Last Version Date 2024-11-27
Entry Detail
PDB ID:
8J8N
Keywords:
Title:
Structure of p53 DNA-binding domain and ZNF568 KRAB domain complex
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
9.02 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Cellular tumor antigen p53
Gene (Uniprot):TP53
Chain IDs:B (auth: A), C (auth: B), D (auth: C), E (auth: D)
Chain Length:201
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Zinc finger protein 568
Chain IDs:A (auth: F), F (auth: E)
Chain Length:119
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Influence of the interaction between p53 and ZNF568 on mitochondrial oxidative phosphorylation.
Int.J.Biol.Macromol. 275 133314 133314 (2024)
PMID: 38944084 DOI: 10.1016/j.ijbiomac.2024.133314

Abstact

The tumor suppressor p53 plays important roles in suppressing the development and progression of cancer by responding to various stress signals. In addition, p53 can regulate the metabolic pathways of cancer cells by regulating energy metabolism and oxidative phosphorylation. Here, we present a mechanism for the interaction between p53 and ZNF568. Initially, we used X-ray crystallography to determine the irregular loop structure of the ZNF568 KRAB domain; this loop plays an important role in the interaction between p53 and ZNF568. In addition, Cryo-EM was used to examine how the p53 DBD and ZNF568 KRAB domains bind together. The function of ZNF568 on p53-mediated mitochondrial respiration was confirmed by measuring glucose consumption and lactate production. These findings show that ZNF568 can reduce p53-mediated mitochondrial respiratory activity by binding to p53 and inhibiting the transcription of SCO2. SIGNIFICANCE: ZNF568 can directly bind to the p53 DBD and transcriptionally regulate the SCO2 gene. SCO2 transcriptional regulation by interaction between ZNF568 and p53 may regulate the balance between mitochondrial respiration and glycolysis.

Legend

Protein

Chemical

Disease

Primary Citation of related structures