8J7E image
Deposition Date 2023-04-27
Release Date 2023-09-06
Last Version Date 2024-10-30
Entry Detail
PDB ID:
8J7E
Keywords:
Title:
Crystal structure of BRIL in complex with 1b3 Fab
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Escherichia coli (Taxon ID: 562)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.80 Å
R-Value Free:
0.25
R-Value Work:
0.19
R-Value Observed:
0.20
Space Group:
P 31 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Antibody 1b3 Fab Heavy chain
Chain IDs:A, C
Chain Length:235
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Antibody 1b3 Fab Light chain
Chain IDs:B, D
Chain Length:237
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Soluble cytochrome b562
Gene (Uniprot):cybC
Chain IDs:E, F
Chain Length:106
Number of Molecules:2
Biological Source:Escherichia coli
Primary Citation
A method for structure determination of GPCRs in various states.
Nat.Chem.Biol. 20 74 82 (2024)
PMID: 37580554 DOI: 10.1038/s41589-023-01389-0

Abstact

G-protein-coupled receptors (GPCRs) are a class of integral membrane proteins that detect environmental cues and trigger cellular responses. Deciphering the functional states of GPCRs induced by various ligands has been one of the primary goals in the field. Here we developed an effective universal method for GPCR cryo-electron microscopy structure determination without the need to prepare GPCR-signaling protein complexes. Using this method, we successfully solved the structures of the β2-adrenergic receptor (β2AR) bound to antagonistic and agonistic ligands and the adhesion GPCR ADGRL3 in the apo state. For β2AR, an intermediate state stabilized by the partial agonist was captured. For ADGRL3, the structure revealed that inactive ADGRL3 adopts a compact fold and that large unusual conformational changes on both the extracellular and intracellular sides are required for activation of adhesion GPCRs. We anticipate that this method will open a new avenue for understanding GPCR structure‒function relationships and drug development.

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